Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 10726 | 2012 |
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ... PloS one 9 (11), e112963, 2014 | 7686 | 2014 |
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ... Genome research 21 (3), 494-504, 2011 | 3566 | 2011 |
A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 2480 | 2012 |
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma AD Kostic, D Gevers, CS Pedamallu, M Michaud, F Duke, AM Earl, ... Genome research 22 (2), 292-298, 2012 | 2146 | 2012 |
Individual intestinal symbionts induce a distinct population of RORγ+ regulatory T cells E Sefik, N Geva-Zatorsky, S Oh, L Konnikova, D Zemmour, AM McGuire, ... Science 349 (6251), 993-997, 2015 | 911 | 2015 |
A catalog of reference genomes from the human microbiome Human Microbiome Jumpstart Reference Strains Consortium, KE Nelson, ... Science 328 (5981), 994-999, 2010 | 851 | 2010 |
Ecology and genomics of Bacillus subtilis AM Earl, R Losick, R Kolter Trends in microbiology 16 (6), 269-275, 2008 | 766 | 2008 |
Relating the metatranscriptome and metagenome of the human gut EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ... Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014 | 699 | 2014 |
Fap2 mediates Fusobacterium nucleatum colorectal adenocarcinoma enrichment by binding to tumor-expressed Gal-GalNAc J Abed, JEM Emgård, G Zamir, M Faroja, G Almogy, A Grenov, A Sol, ... Cell host & microbe 20 (2), 215-225, 2016 | 675 | 2016 |
Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012 | 656 | 2012 |
Gut microbiota utilize immunoglobulin A for mucosal colonization GP Donaldson, MS Ladinsky, KB Yu, JG Sanders, BB Yoo, WC Chou, ... Science 360 (6390), 795-800, 2018 | 630 | 2018 |
Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a … FA Rainey, K Ray, M Ferreira, BZ Gatz, MF Nobre, D Bagaley, BA Rash, ... Applied and environmental microbiology 71 (9), 5225-5235, 2005 | 459 | 2005 |
Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains F Lebreton, W van Schaik, A Manson McGuire, P Godfrey, A Griggs, ... MBio 4 (4), 10.1128/mbio. 00534-13, 2013 | 450 | 2013 |
Why is Deinococcus radiodurans so resistant to ionizing radiation? JR Battista, AM Earl, MJ Park Trends in microbiology 7 (9), 362-365, 1999 | 362 | 1999 |
Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation and Desiccation Reveals Novel Proteins That Contribute to Extreme … M Tanaka, AM Earl, HA Howell, MJ Park, JA Eisen, SN Peterson, ... Genetics 168 (1), 21-33, 2004 | 358 | 2004 |
Evaluation of 16S rDNA-based community profiling for human microbiome research Jumpstart Consortium Human Microbiome Project Data Generation Working Group PloS one 7 (6), e39315, 2012 | 319 | 2012 |
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates … KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ... PLoS medicine 12 (9), e1001880, 2015 | 317 | 2015 |
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395-402, 2017 | 306 | 2017 |
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes G Giannoukos, DM Ciulla, K Huang, BJ Haas, J Izard, JZ Levin, J Livny, ... Genome biology 13, 1-13, 2012 | 289 | 2012 |