| Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ... Annals of Oncology 31 (6), 745-759, 2020 | 960 | 2020 |
| High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants P Razavi, BT Li, DN Brown, B Jung, E Hubbell, R Shen, W Abida, K Juluru, ... Nature medicine 25 (12), 1928-1937, 2019 | 541 | 2019 |
| Comparison of somatic mutation calling methods in amplicon and whole exome sequence data H Xu, J DiCarlo, RV Satya, Q Peng, Y Wang BMC genomics 15, 1-10, 2014 | 196 | 2014 |
| Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes Q Peng, R Vijaya Satya, M Lewis, P Randad, Y Wang BMC genomics 16, 1-12, 2015 | 145 | 2015 |
| Ultra-deep next-generation sequencing of plasma cell-free DNA in patients with advanced lung cancers: results from the Actionable Genome Consortium BT Li, F Janku, B Jung, C Hou, K Madwani, R Alden, P Razavi, ... Annals of Oncology 30 (4), 597-603, 2019 | 138 | 2019 |
| A new strategy to reduce allelic bias in RNA-Seq readmapping R Vijaya Satya, N Zavaljevski, J Reifman Nucleic acids research 40 (16), e127-e127, 2012 | 124 | 2012 |
| Olfactory use in virtual environment training DA Washburn, LM Jones, RV Satya, CA Bowers, A Cortes Modeling & Simulation 2 (3), 19-25, 2003 | 72 | 2003 |
| 16S rRNA gene pyrosequencing of reference and clinical samples and investigation of the temperature stability of microbiome profiles J Hang, V Desai, N Zavaljevski, Y Yang, X Lin, RV Satya, LJ Martinez, ... Microbiome 2, 1-15, 2014 | 68 | 2014 |
| Development and validation of an ultradeep next-generation sequencing assay for testing of plasma cell-free DNA from patients with advanced cancer F Janku, S Zhang, J Waters, L Liu, HJ Huang, V Subbiah, DS Hong, ... Clinical Cancer Research 23 (18), 5648-5656, 2017 | 50 | 2017 |
| A high-throughput pipeline for designing microarray-based pathogen diagnostic assays R Vijaya Satya, N Zavaljevski, K Kumar, J Reifman BMC bioinformatics 9, 1-13, 2008 | 41 | 2008 |
| The effect of olfaction on immersion into virtual environments L Jones, CA Bowers, D Washburn, A Cortes, RV Satya Human performance, situation awareness and automation: Issues and …, 2004 | 37 | 2004 |
| A high-throughput pipeline for the design of real-time PCR signatures R Vijaya Satya, K Kumar, N Zavaljevski, J Reifman BMC bioinformatics 11, 1-10, 2010 | 35 | 2010 |
| A pattern matching algorithm for codon optimization and CpG motif-engineering in DNA expression vectors RV Satya, A Mukherjee, U Ranga Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003 | 30 | 2003 |
| Cell-free DNA (cfDNA) mutations from clonal hematopoiesis: Implications for interpretation of liquid biopsy tests. P Razavi, BT Li, C Hou, R Shen, O Venn, RS Lim, E Hubbell, I De Bruijn, ... Journal of Clinical Oncology 35 (15_suppl), 11526-11526, 2017 | 29 | 2017 |
| AGeS: a software system for microbial genome sequence annotation K Kumar, V Desai, L Cheng, M Khitrov, D Grover, RV Satya, C Yu, ... PLoS One 6 (3), e17469, 2011 | 29 | 2011 |
| AGeS: a software system for microbial genome sequence annotation K Kumar, V Desai, L Cheng, M Khitrov, D Grover, RV Satya, C Yu, ... PLoS One 6 (3), e17469, 2011 | 29 | 2011 |
| In silico microarray probe design for diagnosis of multiple pathogens R Vijaya Satya, N Zavaljevski, K Kumar, E Bode, S Padilla, L Wasieloski, ... BMC genomics 9, 1-11, 2008 | 27 | 2008 |
| PCA and clustering reveal alternate mtDNA phylogeny of N and M clades G Alexe, R Vijaya Satya, M Seiler, D Platt, T Bhanot, S Hui, M Tanaka, ... Journal of molecular evolution 67, 465-487, 2008 | 23 | 2008 |
| PTAP motif duplication in the p6 Gag protein confers a replication advantage on HIV-1 subtype C S Sharma, PS Arunachalam, M Menon, V Ragupathy, RV Satya, J Jebaraj, ... Journal of Biological Chemistry 293 (30), 11687-11708, 2018 | 16 | 2018 |
| Quantitative analysis of differences in copy numbers using read depth obtained from PCR-enriched samples and controls F Reinecke, RV Satya, J DiCarlo BMC bioinformatics 16, 1-9, 2015 | 16 | 2015 |
