Avishek Kumar

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Michael ThorpeFoundation Professor, Arizona State UniversityVerified email at asu.edu
S. Banu OzkanProfessor of Physics, Arizona State UniversityVerified email at asu.edu
Sean L SeylerSchool of Molecular Sciences, Arizona State UniversityVerified email at asu.edu
Oliver BecksteinCenter for Biological Physics, Department of Physics, Arizona State UniversityVerified email at asu.edu
Brandon Mac ButlerMcKesson; Arizona State UniversityVerified email at mckesson.com
Rayid GhaniCarrnegie Mellon UniversityVerified email at rayidghani.com
martin van heckeLeiden University / AmolfVerified email at amolf.nl
Varda F. HaghAssistant Professor, University of Illinois Urbana ChampaignVerified email at illinois.edu
Wouter G. EllenbroekEindhoven University of TechnologyVerified email at tue.nl
Sudhir KumarDirector, iGEM, Carnell Professor of Biology, Temple UniversityVerified email at temple.edu
David SherringtonUniversity of OxfordVerified email at physics.ox.ac.uk
I Can KazanArizona State UniversityVerified email at asu.edu
Adolfo De UnánueEGobiernoyTP : Tec de MonterreyVerified email at tec.mx
Arthi RamachandranPostdoctoral Scholar, University of ChicagoVerified email at uchicago.edu
Dinh Van TuanDepartment of Electrical and Computer Engineering, University of RochesterVerified email at ece.rochester.edu
Frank OrtmannTechnische Universität München, GermanyVerified email at tum.de
P. OrdejonICN2 - Institut Català de Nanociència i NanotecnologiaVerified email at icn2.cat
Syed Ali Asad RizviMachine Learning Research Group, University of OxfordVerified email at eng.ox.ac.uk
Sam EdelsteinChief Data Officer, City of SyracuseVerified email at syrgov.net
David A. DraboldOhio UniversityVerified email at ohio.edu

Avishek Kumar

Intuit AI

Verified email at asu.edu

Condensed Matter Biological Physics Personalized Medicine Data Science


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Rigidity Loss in Disordered Systems: Three Scenarios WG Ellenbroek, VF Hagh, A Kumar, MF Thorpe, M van Hecke Physical review letters 114 (13), 135501, 2015	92	2015
Path similarity analysis: a method for quantifying macromolecular pathways SL Seyler, A Kumar, MF Thorpe, O Beckstein PLoS computational biology 11 (10), e1004568, 2015	70	2015
Amorphous graphene: a realization of Zachariasen’s glass A Kumar, M Wilson, MF Thorpe Journal of Physics: Condensed Matter 24 (48), 485003, 2012	67	2012
The Role of Conformational Dynamics and Allostery in the Disease Development of Human Ferritin A Kumar, TJ Glembo, SB Ozkan Biophysical journal 109 (6), 1273-1281, 2015	61	2015
Insulating behavior of an amorphous graphene membrane D Van Tuan, A Kumar, S Roche, F Ortmann, MF Thorpe, P Ordejon Physical Review B 86 (12), 121408, 2012	56	2012
Using Machine Learning to Assess the Risk of and Prevent Water Main Breaks A Kumar, SAA Rizvi, B Brooks, RA Vanderveld, KH Wilson, C Kenney, ... Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018	48	2018
Pentagonal puckering in a sheet of amorphous graphene Y Li, F Inam, A Kumar, MF Thorpe, DA Drabold physica status solidi (b) 248 (9), 2082-2086, 2011	47	2011
Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine A Kumar, BM Butler, S Kumar, SB Ozkan Current opinion in structural biology 35, 135-142, 2015	40	2015
Modeling vitreous silica bilayers M Wilson, A Kumar, D Sherrington, MF Thorpe Physical Review B 87 (21), 214108, 2013	38	2013
Predictive analytics for retention in care in an urban HIV clinic A Ramachandran, A Kumar, H Koenig, A De Unanue, C Sung, J Walsh, ... Scientific reports 10 (1), 6421, 2020	34	2020
Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants NJ Ose, BM Butler, A Kumar, IC Kazan, M Sanderford, S Kumar, ... PLoS computational biology 18 (4), e1010006, 2022	23	2022
Ring statistics of silica bilayers A Kumar, D Sherrington, M Wilson, MF Thorpe Journal of Physics: Condensed Matter 26 (39), 395401, 2014	22	2014
Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs BM Butler, IC Kazan, A Kumar, SB Ozkan PLOS Computational Biology 14 (11), e1006626, 2018	19	2018
Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics A Kumar, P Campitelli, MF Thorpe, SB Ozkan Proteins: Structure, Function, and Bioinformatics 83 (12), 2279-2292, 2015	5	2015
A Machine Learning System for Retaining Patients in HIV Care A Kumar, A Ramachandran, A De Unanue, C Sung, J Walsh, J Schneider, ... arXiv preprint arXiv:2006.04944, 2020	4	2020
Protein and RNA structure prediction by integration of co-evolutionary information into molecular simulation E De Leonardis, B Lutz, S Cocco, R Monasson, H Szurmant, M Weigt, ... Biophysical Journal 108 (2), 13a-14a, 2015	4	2015
Dynamic Allosteric Residue Coupling Reveals Disease Mechanism for Gaucher Disease and NSNVS Across the Proteome N Ose, BM Butler, A Kumar, SB Ozkan, S Kumar Biophysical Journal 118 (3), 53a, 2020	3	2020
Quantifying Macromolecular Conformational Transition Pathways O Beckstein, SL Seyler, A Kumar, MF Thorpe Biophysical Journal 108 (2), 13a, 2015	1	2015
Monday, February 4, 2013 229a A Kumar, MF Thorpe, SB Ozkan	1*
Predictive Analytics for Retention in Care in an Urban HIV Clinic R Arthi, K Avishek, H Koenig, UA De, C Sung, J Walsh, J Schneider, ... Scientific Reports (Nature Publisher Group) 10 (1), 2020		2020

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