| Pan-cancer analysis of whole genomes PJ Campbell, G Getz, JO Korbel, P Consortium Nature 578 (7793), 82-93, 2020 | 1922* | 2020 |
| Two independent modes of chromosome organization are revealed by cohesin removal FS Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska ... Nature, 2017 | 1149* | 2017 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 815 | 2013 |
| Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ... Nucleic acids research 44 (D1), D746-D752, 2016 | 644 | 2016 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 638 | 2011 |
| Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... Nature genetics 52 (3), 331-341, 2020 | 615 | 2020 |
| ArrayExpress update–from bulk to single-cell expression data A Athar, A Füllgrabe, N George, H Iqbal, L Huerta, A Ali, C Snow, ... Nucleic acids research 47 (D1), D711-D715, 2019 | 577 | 2019 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 572 | 2020 |
| Expression Atlas update: from tissues to single cells I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ... Nucleic acids research 48 (D1), D77-D83, 2020 | 534 | 2020 |
| Expression Atlas: gene and protein expression across multiple studies and organisms I Papatheodorou, NA Fonseca, M Keays, YA Tang, E Barrera, W Bazant, ... Nucleic acids research 46 (D1), D246-D251, 2018 | 417 | 2018 |
| Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ... Nucleic acids research 42 (D1), D926-D932, 2014 | 381 | 2014 |
| Tools for mapping high-throughput sequencing data NA Fonseca, J Rung, A Brazma, JC Marioni Bioinformatics 28 (24), 3169-3177, 2012 | 381 | 2012 |
| Genomic basis for RNA alterations in cancer PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ... Nature 578 (7793), 129-136, 2020 | 325 | 2020 |
| Transcription factor activities enhance markers of drug sensitivity in cancer LM Garcia-Alonso, F Iorio, A Matchan, NA Fonseca, P Jaaks, G Peat, ... Cancer Research, canres. 1679.2017, 2017 | 190 | 2017 |
| A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters D Demircioğlu, E Cukuroglu, M Kindermans, T Nandi, C Calabrese, ... Cell 178 (6), 1465-1477. e17, 2019 | 186 | 2019 |
| Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis J Carlevaro-Fita, A Lanzós, L Feuerbach, C Hong, D Mas-Ponte, ... Communications biology 3 (1), 56, 2020 | 183 | 2020 |
| Integrative pathway enrichment analysis of multivariate omics data M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ... Nature communications 11 (1), 735, 2020 | 168 | 2020 |
| Gramene 2018: unifying comparative genomics and pathway resources for plant research MK Tello-Ruiz, S Naithani, JC Stein, P Gupta, M Campbell, A Olson, ... Nucleic acids research 46 (D1), D1181-D1189, 2018 | 166 | 2018 |
| Long-range enhancers regulating Myc expression are required for normal facial morphogenesis VV Uslu, M Petretich, S Ruf, K Langenfeld, NA Fonseca, JC Marioni, ... Nature genetics 46 (7), 753-758, 2014 | 158 | 2014 |
| Gramene 2016: comparative plant genomics and pathway resources MK Tello-Ruiz, J Stein, S Wei, J Preece, A Olson, S Naithani, ... Nucleic acids research 44 (D1), D1133-D1140, 2016 | 148 | 2016 |
Alvis BrazmaEMBL Scientist EmeritusVerified email at ebi.ac.uk
