Super-resolution imaging reveals distinct chromatin folding for different epigenetic states AN Boettiger, B Bintu, JR Moffitt, S Wang, BJ Beliveau, G Fudenberg, ... Nature 529 (7586), 418-422, 2016 | 842 | 2016 |
Spatial organization of chromatin domains and compartments in single chromosomes S Wang, JH Su, BJ Beliveau, B Bintu, JR Moffitt, C Wu, X Zhuang Biophysical Journal 112 (3), 217a, 2017 | 634 | 2017 |
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes BJ Beliveau, EF Joyce, N Apostolopoulos, F Yilmaz, CY Fonseka, ... Proceedings of the National Academy of Sciences 109 (52), 21301-21306, 2012 | 447 | 2012 |
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes BJ Beliveau, AN Boettiger, MS Avendaño, R Jungmann, RB McCole, ... Nature communications 6 (1), 7147, 2015 | 380 | 2015 |
Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues SK Saka, Y Wang, JY Kishi, A Zhu, Y Zeng, W Xie, K Kirli, C Yapp, ... Nature biotechnology 37 (9), 1080-1090, 2019 | 326 | 2019 |
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues JY Kishi, SW Lapan, BJ Beliveau, ER West, A Zhu, HM Sasaki, SK Saka, ... Nature methods 16 (6), 533-544, 2019 | 307 | 2019 |
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ... PLoS genetics 14 (12), e1007872, 2018 | 238 | 2018 |
OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes BJ Beliveau, JY Kishi, G Nir, HM Sasaki, SK Saka, SC Nguyen, C Wu, ... Proceedings of the National Academy of Sciences 115 (10), E2183-E2192, 2018 | 187 | 2018 |
Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT F Schueder, J Lara-Gutiérrez, BJ Beliveau, SK Saka, HM Sasaki, ... Nature communications 8 (1), 2090, 2017 | 157 | 2017 |
Islands of retroelements are major components of Drosophila centromeres CH Chang, A Chavan, J Palladino, X Wei, NMC Martins, B Santinello, ... PLoS biology 17 (5), e3000241, 2019 | 135 | 2019 |
3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing HQ Nguyen, S Chattoraj, D Castillo, SC Nguyen, G Nir, A Lioutas, ... Nature methods 17 (8), 822-832, 2020 | 117 | 2020 |
Scalable amplification of strand subsets from chip-synthesized oligonucleotide libraries TL Schmidt, BJ Beliveau, YO Uca, M Theilmann, F Da Cruz, CT Wu, ... Nature communications 6 (1), 8634, 2015 | 91 | 2015 |
A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues AK Glaser, KW Bishop, LA Barner, EA Susaki, SI Kubota, G Gao, ... Nature methods 19 (5), 613-619, 2022 | 82 | 2022 |
Germline Progenitors Escape the Widespread Phenomenon of Homolog Pairing during Drosophila Development EF Joyce, N Apostolopoulos, BJ Beliveau, C Wu PLoS genetics 9 (12), e1004013, 2013 | 80 | 2013 |
In situ super-resolution imaging of genomic DNA with OligoSTORM and OligoDNA-PAINT BJ Beliveau, AN Boettiger, G Nir, B Bintu, P Yin, X Zhuang, C Wu Super-resolution microscopy: methods and protocols, 231-252, 2017 | 76 | 2017 |
Visualizing genomes with Oligopaint FISH probes BJ Beliveau, N Apostolopoulos, C Wu Current protocols in molecular biology 105 (1), 14.23. 1-14.23. 20, 2014 | 73 | 2014 |
Allelic imbalance is a prevalent and tissue-specific feature of the mouse transcriptome SF Pinter, D Colognori, BJ Beliveau, RI Sadreyev, B Payer, E Yildirim, ... Genetics 200 (2), 537-549, 2015 | 53 | 2015 |
Optimized single-nucleus transcriptional profiling by combinatorial indexing BK Martin, C Qiu, E Nichols, M Phung, R Green-Gladden, S Srivatsan, ... Nature protocols 18 (1), 188-207, 2023 | 48* | 2023 |
Avoiding the ends: internal epitope tagging of proteins using transposon Tn7 RE Zordan, BJ Beliveau, JA Trow, NL Craig, BP Cormack Genetics 200 (1), 47-58, 2015 | 46 | 2015 |
Combining Qdot nanotechnology and DNA nanotechnology for sensitive single‐cell imaging W Zhou, Y Han, BJ Beliveau, X Gao Advanced Materials 32 (30), 1908410, 2020 | 42 | 2020 |