Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015 | 633 | 2015 |
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017 | 617 | 2017 |
The RNA m6A reader YTHDF2 maintains oncogene expression and is a targetable dependency in glioblastoma stem cells D Dixit, BC Prager, RC Gimple, HX Poh, Y Wang, Q Wu, Z Qiu, RL Kidwell, ... Cancer discovery 11 (2), 480-499, 2021 | 306 | 2021 |
Identification of a nuclear exosome decay pathway for processed transcripts N Meola, M Domanski, E Karadoulama, Y Chen, C Gentil, D Pultz, ... Molecular cell 64 (3), 520-533, 2016 | 266 | 2016 |
IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences K Vitting-Seerup, A Sandelin Bioinformatics 35 (21), 4469-4471, 2019 | 239 | 2019 |
The landscape of isoform switches in human cancers K Vitting-Seerup, A Sandelin Molecular Cancer Research 15 (9), 1206-1220, 2017 | 236 | 2017 |
Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes N Grarup, I Moltke, MK Andersen, M Dalby, K Vitting-Seerup, T Kern, ... Nature genetics 50 (2), 172-174, 2018 | 180 | 2018 |
spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data K Vitting-Seerup, BT Porse, A Sandelin, J Waage BMC bioinformatics 15, 1-7, 2014 | 148 | 2014 |
Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies M Boyd, M Thodberg, M Vitezic, J Bornholdt, K Vitting-Seerup, Y Chen, ... Nature communications 9 (1), 1661, 2018 | 100 | 2018 |
UPF2-dependent nonsense-mediated mRNA decay pathway is essential for spermatogenesis by selectively eliminating longer 3'UTR transcripts J Bao, K Vitting-Seerup, J Waage, C Tang, Y Ge, BT Porse, W Yan PLoS genetics 12 (5), e1005863, 2016 | 93 | 2016 |
Targeting glioma stem‐like cell survival and chemoresistance through inhibition of lysine‐specific histone demethylase KDM 2B M Staberg, RD Rasmussen, SR Michaelsen, H Pedersen, KE Jensen, ... Molecular oncology 12 (3), 406-420, 2018 | 66 | 2018 |
Astrogliogenesis in human fetal brain: complex spatiotemporal immunoreactivity patterns of GFAP, S100, AQP 4 and YKL‐40 CB Holst, CB Brøchner, K Vitting‐Seerup, K Møllgård Journal of Anatomy 235 (3), 590-615, 2019 | 65 | 2019 |
UBL5 is essential for pre‐mRNA splicing and sister chromatid cohesion in human cells Y Oka, H Varmark, K Vitting‐Seerup, P Beli, J Waage, A Hakobyan, ... EMBO reports 15 (9), 956-964, 2014 | 65 | 2014 |
CAGEfightR: analysis of 5′-end data using R/Bioconductor M Thodberg, A Thieffry, K Vitting-Seerup, R Andersson, A Sandelin BMC bioinformatics 20, 1-13, 2019 | 55 | 2019 |
A functional link between nuclear RNA decay and transcriptional control mediated by the polycomb repressive complex 2 W Garland, I Comet, M Wu, A Radzisheuskaya, L Rib, K Vitting-Seerup, ... Cell reports 29 (7), 1800-1811. e6, 2019 | 46 | 2019 |
Mutant CEBPA directly drives the expression of the targetable tumor-promoting factor CD73 in AML JS Jakobsen, LG Laursen, MB Schuster, S Pundhir, E Schoof, Y Ge, ... Science advances 5 (7), eaaw4304, 2019 | 41 | 2019 |
Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq JS Jakobsen, FO Bagger, MS Hasemann, MB Schuster, AK Frank, ... BMC genomics 16, 1-12, 2015 | 38 | 2015 |
Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo J Bornholdt, AT Saber, B Lilje, M Boyd, M Jørgensen, Y Chen, M Vitezic, ... ACS nano 11 (4), 3597-3613, 2017 | 31 | 2017 |
Replication protein A (RPA) mediates radio-resistance of glioblastoma cancer stem-like cells H Pedersen, E Anne Adanma Obara, KJ Elbæk, K Vitting-Serup, ... International Journal of Molecular Sciences 21 (5), 1588, 2020 | 27 | 2020 |
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase H Ienasescu, K Li, R Andersson, M Vitezic, S Rennie, Y Chen, ... Database 2016, baw144, 2016 | 26 | 2016 |