| STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method DA Earl, BM VonHoldt Conservation genetics resources 4, 359-361, 2012 | 12867 | 2012 |
| Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication BM vonHoldt, JP Pollinger, KE Lohmueller, E Han, HG Parker, P Quignon, ... Nature 464 (7290), 898-902, 2010 | 912 | 2010 |
| Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM CJ Vaske, SC Benz, JZ Sanborn, D Earl, C Szeto, J Zhu, D Haussler, ... Bioinformatics 26 (12), i237-i245, 2010 | 896 | 2010 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 809 | 2013 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 636 | 2011 |
| A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids BM vonHoldt, JP Pollinger, DA Earl, JC Knowles, AR Boyko, H Parker, ... Genome Research 21 (8), 1294-1305, 2011 | 380* | 2011 |
| Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014 | 372 | 2014 |
| Cactus: Algorithms for genome multiple sequence alignment B Paten, D Earl, N Nguyen, M Diekhans, D Zerbino, D Haussler Genome research 21 (9), 1512-1528, 2011 | 290 | 2011 |
| The genealogy and genetic viability of reintroduced Yellowstone grey wolves BM Vonholdt, DR Stahler, DW Smith, DA Earl, JP Pollinger, RK Wayne Molecular ecology 17 (1), 252-274, 2008 | 243 | 2008 |
| Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ... Nature genetics 50 (11), 1574-1583, 2018 | 208 | 2018 |
| HAL: a hierarchical format for storing and analyzing multiple genome alignments G Hickey, B Paten, D Earl, D Zerbino, D Haussler Bioinformatics 29 (10), 1341-1342, 2013 | 186 | 2013 |
| Cactus graphs for genome comparisons B Paten, M Diekhans, D Earl, JS John, J Ma, B Suh, D Haussler Journal of Computational Biology 18 (3), 469-481, 2011 | 136 | 2011 |
| Alignathon: a competitive assessment of whole-genome alignment methods D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ... Genome research 24 (12), 2077-2089, 2014 | 127 | 2014 |
| Retrotransposition of gene transcripts leads to structural variation in mammalian genomes AD Ewing, TJ Ballinger, D Earl, ... Genome biology 14, 1-14, 2013 | 114 | 2013 |
| Structure harvester v0. 6.1 DA Earl | 102 | 2011 |
| Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation IT Fiddes, J Armstrong, M Diekhans, S Nachtweide, ZN Kronenberg, ... Genome research 28 (7), 1029-1038, 2018 | 101 | 2018 |
| Building a pan-genome reference for a population N Nguyen, G Hickey, DR Zerbino, B Raney, D Earl, J Armstrong, WJ Kent, ... Journal of Computational Biology 22 (5), 387-401, 2015 | 63 | 2015 |
| Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping BM Vonholdt, JP Pollinger, DA Earl, HG Parker, EA Ostrander, RK Wayne Mammalian Genome 24, 80-88, 2013 | 63 | 2013 |
| Structure Harvester: un sitio web y un programa para visualizar la salida de Structure e implementar el método Evanno DA Earl, BM von Holdt Recursos Genéticos de Conservación 4, 359-361, 2012 | 57 | 2012 |
| Structure Harvester v0. 3 DA Earl See http://taylor0. biology. ucla. edu/struct_harvest, 2009 | 49 | 2009 |
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
