| DNA reference alignment benchmarks based on tertiary structure of encoded proteins H Carroll, W Beckstead, T O'connor, M Ebbert, M Clement, Q Snell, ... Bioinformatics 23 (19), 2648-2649, 2007 | 89 | 2007 |
| Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions BT Grimes, AK Sisay, HD Carroll, AB Cahoon BMC genomics 15 (1), 31, 2014 | 57 | 2014 |
| Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics HD Carroll, MG Kann, SL Sheetlin, JL Spouge Bioinformatics 26 (14), 1708-1713, 2010 | 48 | 2010 |
| A computational pipeline for crowdsourced transcriptions of Ancient Greek papyrus fragments AC Williams, JF Wallin, H Yu, M Perale, HD Carroll, AF Lamblin, L Fortson, ... 2014 IEEE International Conference on Big Data (Big Data), 100-105, 2014 | 36 | 2014 |
| Plastid transcript editing across dinoflagellate lineages shows lineage-specific application but conserved trends CM Klinger, L Paoli, RJ Newby, MYW Wang, HD Carroll, JD Leblond, ... Genome biology and evolution 10 (4), 1019-1038, 2018 | 25 | 2018 |
| Effects of gap open and gap extension penalties H Carroll, MJ Clement, P Ridge, QO Snell BIOT, 2006 | 21 | 2006 |
| Analysis of long branch extraction and long branch shortening T O’Connor, K Sundberg, H Carroll, M Clement, Q Snell BMC genomics 11 (2), S14, 2010 | 18 | 2010 |
| Identification of ancient greek papyrus fragments using genetic sequence alignment algorithms AC Williams, HD Carroll, JF Wallin, J Brusuelas, L Fortson, AF Lamblin, ... 2014 IEEE 10th International Conference on e-Science 2, 5-10, 2014 | 12 | 2014 |
| Identification of ancient greek papyrus fragments using genetic sequence alignment algorithms AC Williams, HD Carroll, JF Wallin, J Brusuelas, L Fortson, AF Lamblin, ... 2014 IEEE 10th International Conference on e-Science 2, 5-10, 2014 | 12 | 2014 |
| PSODA: Better tasting and less filling than PAUP H Carroll, MJ Clement, M Ebbert, QO Snell BIOT, 2007 | 10 | 2007 |
| Proteus: A platform for born digital critical editions of literary and subliterary papyri AC Williams, A Santarsiero, C Meccariello, G Verhasselt, HD Carroll, ... 2015 Digital Heritage 2, 453-456, 2015 | 8 | 2015 |
| PathGen: a transitive gene pathway generator K Clement, N Gustafson, A Berbert, H Carroll, C Merris, A Olsen, ... Bioinformatics 26 (3), 423-425, 2009 | 8 | 2009 |
| An open source phylogenetic search and alignment package H Carroll, AR Teichert, J Krein, K Sundberg, Q Snell, M Clement International journal of bioinformatics research and applications 5 (3), 349-364, 2009 | 8 | 2009 |
| Incomparability of Results Between Phylogenetic Search Programs. K Sundberg, H Carroll, Q Snell, MJ Clement BIOCOMP, 81-84, 2008 | 6 | 2008 |
| A trace-driven simulator for palm os devices H Carroll, JK Flanagan, S Baniya IEEE International Symposium on Performance Analysis of Systems and Software …, 2005 | 6 | 2005 |
| Large grain size stochastic optimization alignment P Ridge, H Carroll, D Sneddon, M Clement, Q Snell Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), 127-134, 2006 | 5 | 2006 |
| Improving retrieval efficacy of homology searches using the false discovery rate HD Carroll, AC Williams, AG Davis, JL Spouge IEEE/ACM transactions on computational biology and bioinformatics 12 (3 …, 2014 | 4 | 2014 |
| Using parsimony to guide maximum likelihood searches K Sundberg, T O'Connor, H Carroll, M Clement, Q Snell 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering …, 2007 | 4 | 2007 |
| MultiDomainBenchmark: a multi-domain query and subject database suite HD Carroll, JL Spouge, M Gonzalez BMC bioinformatics 20 (1), 77, 2019 | 3 | 2019 |
| ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties H Carroll, M Clement, Q Snell, D McClellan 2009 IEEE International Conference on Bioinformatics and Biomedicine, 70-73, 2009 | 3 | 2009 |
