| Fast and accurate de novo genome assembly from long uncorrected reads R Vaser, I Sović, N Nagarajan, M Šikić Genome research 27 (5), 737-746, 2017 | 2611 | 2017 |
| Comprehensive characterization of cancer driver genes and mutations MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cell 173 (2), 371-385. e18, 2018 | 2445 | 2018 |
| Statistical methods for detecting differentially abundant features in clinical metagenomic samples JR White, N Nagarajan, M Pop PLoS computational biology 5 (4), e1000352, 2009 | 1651 | 2009 |
| LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ... Nucleic acids research 40 (22), 11189-11201, 2012 | 1329 | 2012 |
| The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Nature 452 (7190), 991-996, 2008 | 1274 | 2008 |
| The draft genome of sweet orange (Citrus sinensis) Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ... Nature genetics 45 (1), 59-66, 2013 | 1131 | 2013 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 824 | 2017 |
| Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly ET Lam, A Hastie, C Lin, D Ehrlich, SK Das, MD Austin, P Deshpande, ... Nature biotechnology 30 (8), 771-776, 2012 | 781 | 2012 |
| Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ... Nature genetics 44 (5), 570-574, 2012 | 720 | 2012 |
| A common BIM deletion polymorphism mediates intrinsic resistance and inferior responses to tyrosine kinase inhibitors in cancer KP Ng, AM Hillmer, CTH Chuah, WC Juan, TK Ko, ASM Teo, ... Nature medicine 18 (4), 521-528, 2012 | 686 | 2012 |
| Sequence assembly demystified N Nagarajan, M Pop Nature Reviews Genetics 14 (3), 157-167, 2013 | 669 | 2013 |
| Fast and sensitive mapping of nanopore sequencing reads with GraphMap I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan Nature communications 7 (1), 11307, 2016 | 433 | 2016 |
| Perspective on oncogenic processes at the end of the beginning of cancer genomics L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ... Cell 173 (2), 305-320. e10, 2018 | 408 | 2018 |
| Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ... Nature microbiology 1 (9), 1-10, 2016 | 392 | 2016 |
| In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ... Molecular cell 62 (4), 603-617, 2016 | 345 | 2016 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 345 | 2015 |
| Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes D Bertrand, J Shaw, M Kalathiyappan, AHQ Ng, MS Kumar, C Li, ... Nature biotechnology 37 (8), 937-944, 2019 | 317 | 2019 |
| A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021 | 312* | 2021 |
| A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients NM Nguyen, CNB Tran, LK Phung, KTH Duong, HA Huynh, J Farrar, ... The Journal of infectious diseases 207 (9), 1442-1450, 2013 | 291 | 2013 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 279 | 2022 |
Denis BertrandHead of bioinformatics, SeqOneVerified email at seqone.com
