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Alec A.K. Nielsen
Alec A.K. Nielsen
Asimov & Massachusetts Institute of Technology
Verified email at asimov.io - Homepage
Title
Cited by
Cited by
Year
Genetic circuit design automation
AAK Nielsen, BS Der, J Shin, P Vaidyanathan, V Paralanov, ...
Science 352 (6281), aac7341, 2016
10402016
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
YJ Chen, P Liu, AAK Nielsen, JAN Brophy, K Clancy, T Peterson, ...
Nature methods 10 (7), 659-664, 2013
5542013
Genomic mining of prokaryotic repressors for orthogonal logic gates
BC Stanton, AAK Nielsen, A Tamsir, K Clancy, T Peterson, CA Voigt
Nature chemical biology 10 (2), 99-105, 2014
4492014
Multi‐input CRISPR/Cas genetic circuits that interface host regulatory networks
AAK Nielsen, CA Voigt
Molecular systems biology 10 (11), 763, 2014
3022014
Permanent genetic memory with >1-byte capacity
L Yang, AAK Nielsen, J Fernandez-Rodriguez, CJ McClune, MT Laub, ...
Nature methods 11 (12), 1261-1266, 2014
2742014
Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression
AAK Nielsen, TH Segall-Shapiro, CA Voigt
Current opinion in chemical biology 17 (6), 878-892, 2013
1592013
Cellular checkpoint control using programmable sequential logic
LB Andrews, AAK Nielsen, CA Voigt
Science 361 (6408), eaap8987, 2018
1192018
Genetic circuit characterization and debugging using RNA‐seq
TE Gorochowski, A Espah Borujeni, Y Park, AAK Nielsen, J Zhang, ...
Molecular systems biology 13 (11), 952, 2017
982017
Deep learning to predict the lab-of-origin of engineered DNA
AAK Nielsen, CA Voigt
Nature communications 9 (1), 3135, 2018
792018
Technological challenges and milestones for writing genomes
N Ostrov, J Beal, T Ellis, DB Gordon, BJ Karas, HH Lee, SC Lenaghan, ...
Science 366 (6463), 310-312, 2019
702019
Programming Escherichia coli to function as a digital display
J Shin, S Zhang, BS Der, AAK Nielsen, CA Voigt
Molecular systems biology 16 (3), e9401, 2020
682020
DNA assembly in 3D printed fluidics
WG Patrick, AAK Nielsen, SJ Keating, TJ Levy, CW Wang, JJ Rivera, ...
PloS one 10 (12), e0143636, 2015
542015
Genetic circuit characterization by inferring RNA polymerase movement and ribosome usage
A Espah Borujeni, J Zhang, H Doosthosseini, AAK Nielsen, CA Voigt
Nature Communications 11 (1), 5001, 2020
532020
Method for rna-guided endonuclease-based dna assembly
C Voigt, AA Nielsen
US Patent App. 15/696,246, 2018
62018
BBF RFC 31: Provisional BioBrick Language (PoBoL)
M Galdzicki, D Chandran, A Nielsen, J Morrison, M Cowell, R Grünberg, ...
Tech. Rep, 2009
52009
Biomolecular and computational frameworks for genetic circuit design
AAK Nielsen
Massachusetts Institute of Technology, 2017
32017
Provisional BioBrick Language (PoBoL)
M Galdzicki, D Chandran, A Nielsen, J Morrison, M Cowell, R Grünberg, ...
32009
Guide-rna expression system for a host cell
EM Young, A Ghodasara, R Verwaal, JA Roubos, BEM Gielesen, B Vonk, ...
US Patent App. 18/187,937, 2023
2023
A guide-rna expression system for a host cell
EM Young, A Ghodasara, R Verwaal, JA Roubos, BEM Gielesen, B Vonk, ...
US Patent App. 16/334,506, 2020
2020
Methods and compositions for rna-guided genetic circuits
AA Nielsen, CA Voigt
US Patent App. 16/080,707, 2019
2019
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