João André Carriço
João André Carriço
bioMérieux Industry and Researcher, Faculty of Medicine, University of Lisbon
Verified email at - Homepage
Cited by
Cited by
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ...
Genome research 28 (9), 1395-1404, 2018
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
A Francisco, M Bugalho, M Ramirez, J Carriço
BMC bioinformatics 10 (1), 152, 2009
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino, M Ramirez, JA Carriço
BMC bioinformatics 13, 1-10, 2012
Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes
JA Carrico, C Silva-Costa, J Melo-Cristino, FR Pinto, H De Lencastre, ...
Journal of clinical microbiology 44 (7), 2524-2532, 2006
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
M Nascimento, A Sousa, M Ramirez, AP Francisco, JA Carriço, C Vaz
Bioinformatics 33 (1), 128-129, 2017
Analysis of genomic sequences by Chaos Game Representation
JS Almeida, JA Carrico, A Maretzek, PA Noble, M Fletcher
Bioinformatics 17 (5), 429-437, 2001
chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
M Silva, MP Machado, DN Silva, M Rossi, J Moran-Gilad, S Santos, ...
Microbial genomics 4 (3), e000166, 2018
Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains
NA Faria, JA Carrico, DC Oliveira, M Ramirez, H de Lencastre
Journal of clinical microbiology 46 (1), 136, 2008
Adjusted Wallace coefficient as a measure of congruence between typing methods
A Severiano, FR Pinto, M Ramirez, JA Carriço
Journal of clinical microbiology 49 (11), 3997-4000, 2011
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
B Ribeiro-Gonçalves, AP Francisco, C Vaz, M Ramirez, JA Carriço
Nucleic acids research 44 (W1), W246-W251, 2016
Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresis
JA Carrico, FR Pinto, C Simas, S Nunes, NG Sousa, N Frazao, ...
Journal of clinical microbiology 43 (11), 5483, 2005
Effect of the seven-valent conjugate pneumococcal vaccine on carriage and drug resistance of Streptococcus pneumoniae in healthy children attending day-care centers in Lisbon
N Frazão, A Brito-Avô, C Simas, J Saldanha, R Mato, S Nunes, NG Sousa, ...
The Pediatric infectious disease journal 24 (3), 243, 2005
High Rates of Transmission of and Colonization by Streptococcus pneumoniae and Haemophilus influenzae within a Day Care Center Revealed in a Longitudinal …
R Sá-Leao, S Nunes, A Brito-Avô, CR Alves, JA Carriço, J Saldanha, ...
Journal of Clinical Microbiology 46 (1), 225-234, 2008
Molecular characterization of methicillin-resistant Staphylococcus epidermidis clones: evidence of geographic dissemination
M Miragaia, I Couto, SFF Pereira, KG Kristinsson, H Westh, JO Jarlov, ...
Journal of clinical microbiology 40 (2), 430, 2002
Comparison of Molecular Typing Methods for Characterization of Staphylococcus epidermidis: Proposal for Clone Definition
M Miragaia, JA Carrico, JC Thomas, I Couto, MC Enright, H De Lencastre
Journal of Clinical Microbiology 46 (1), 118-129, 2008
Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones …
R Sá-Leao, F Pinto, S Aguiar, S Nunes, JA Carriço, N Frazao, ...
Journal of clinical microbiology 49 (4), 1369-1375, 2011
Trends in drug resistance, serotypes, and molecular types of Streptococcus pneumoniae colonizing preschool-age children attending day care centers in Lisbon, Portugal: a …
S Nunes, R Sa-Leao, J Carriço, CR Alves, R Mato, AB Avô, J Saldanha, ...
Journal of clinical microbiology 43 (3), 1285, 2005
Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution
JA Carriço, AJ Sabat, AW Friedrich, M Ramirez, ...
Eurosurveillance 18 (4), 2013
Evaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measures
A Severiano, JA Carriço, DA Robinson, M Ramirez, FR Pinto
PLoS One 6 (5), e19539, 2011
A primer on microbial bioinformatics for nonbioinformaticians
JA Carriço, M Rossi, J Moran-Gilad, G Van Domselaar, M Ramirez
Clinical Microbiology and Infection 24 (4), 342-349, 2018
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