|Emergence of genomic diversity and recurrent mutations in SARS-CoV-2|
L van Dorp, M Acman, D Richard, LP Shaw, CE Ford, L Ormond, CJ Owen, ...
Infection, Genetics and Evolution 83, 104351, 2020
|The global distribution and spread of the mobilized colistin resistance gene mcr-1|
R Wang, L van Dorp, LP Shaw, P Bradley, Q Wang, X Wang, L Jin, ...
Nature communications 9 (1), 1-9, 2018
|Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast|
DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ...
Nature communications 8 (1), 14061, 2017
|No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2|
L van Dorp, D Richard, CCS Tan, LP Shaw, M Acman, F Balloux
Nature communications 11 (1), 5986, 2020
|Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes|
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...
Microbial genomics 5 (9), e000294, 2019
|From theory to practice: translating whole-genome sequencing (WGS) into the clinic|
F Balloux, OB Brynildsrud, L van Dorp, LP Shaw, H Chen, KA Harris, ...
Trends in microbiology 26 (12), 1035-1048, 2018
|Modelling microbiome recovery after antibiotics using a stability landscape framework|
LP Shaw, H Bassam, CP Barnes, AS Walker, N Klein, F Balloux
The ISME Journal, 2019
|Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet|
F Lassalle, M Spagnoletti, M Fumagalli, L Shaw, M Dyble, C Walker, ...
Molecular ecology 27 (1), 182-195, 2018
|The Human Salivary Microbiome Is Shaped by Shared Environment Rather than Genetics: Evidence from a Large Family of Closely Related Individuals|
L Shaw, ALR Ribeiro, AP Levine, N Pontikos, F Balloux, AW Segal, ...
MBio 8 (5), e01237-17, 2017
|Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines|
SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ...
GigaScience 9 (2), giaa007, 2020
|Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study|
RM Doyle, DM O'sullivan, SD Aller, S Bruchmann, T Clark, ...
Microbial genomics 6 (2), e000335, 2020
|The phylogenetic range of bacterial and viral pathogens of vertebrates|
LP Shaw, AD Wang, D Dylus, M Meier, G Pogacnik, C Dessimoz, ...
Molecular ecology 29 (17), 3361-3379, 2020
|The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples|
HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ...
Environmental Microbiome 14 (1), 1-15, 2019
|Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture|
C Nimmo, LP Shaw, R Doyle, R Williams, K Brien, C Burgess, J Breuer, ...
BMC genomics 20, 1-9, 2019
|DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.|
JS Schreck, TE Ouldridge, F Romano, P Šulc, LP Shaw, AA Louis, ...
Nucleic acids research, 2015
|Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: A Cross-Sectional Cohort Study in Malawi|
L Shaw, U Harjunmaa, R Doyle, S Mulewa, D Charlie, K Maleta, R Callard, ...
Applied and Environmental Microbiology 82 (18), 2016
|Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM|
M Acman, R Wang, L van Dorp, LP Shaw, Q Wang, N Luhmann, Y Yin, ...
Nature Communications 13 (1), 1131, 2022
|STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies|
T Bharucha, C Oeser, F Balloux, JR Brown, EC Carbo, A Charlett, ...
The Lancet Infectious Diseases 20 (10), e251-e260, 2020
|Niche and local geography shape the pangenome of wastewater-and livestock-associated Enterobacteriaceae|
LP Shaw, KK Chau, J Kavanagh, M AbuOun, E Stubberfield, HS Gweon, ...
Science Advances 7 (15), eabe3868, 2021
|Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles.|
LP Shaw, RM Doyle, E Kavaliunaite, H Spencer, F Balloux, G Dixon, ...
Clinical infectious diseases, 2019