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Deepak Bandyopadhyay
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Shader lamps: Animating real objects with image-based illumination
R Raskar, G Welch, KL Low, D Bandyopadhyay
Eurographics workshop on rendering techniques, 89-102, 2001
6292001
Discovery of a first-in-class receptor interacting protein 1 (RIP1) kinase specific clinical candidate (GSK2982772) for the treatment of inflammatory diseases
PA Harris, SB Berger, JU Jeong, R Nagilla, D Bandyopadhyay, ...
Journal of medicinal chemistry 60 (4), 1247-1261, 2017
2972017
Dynamic shader lamps: Painting on movable objects
D Bandyopadhyay, R Raskar, H Fuchs
Proceedings IEEE and ACM International Symposium on Augmented Reality, 207-216, 2001
2752001
DNA-Encoded Library Screening Identifies Benzo[b][1,4]oxazepin-4-ones as Highly Potent and Monoselective Receptor Interacting Protein 1 Kinase Inhibitors
PA Harris, BW King, D Bandyopadhyay, SB Berger, N Campobasso, ...
Journal of medicinal chemistry 59 (5), 2163-2178, 2016
1912016
Mining protein family specific residue packing patterns from protein structure graphs
J Huan, W Wang, D Bandyopadhyay, J Snoeyink, J Prins, A Tropsha
Proceedings of the eighth annual international conference on Research in …, 2004
1782004
Discovery of small molecule RIP1 kinase inhibitors for the treatment of pathologies associated with necroptosis
PA Harris, D Bandyopadhyay, SB Berger, N Campobasso, CA Capriotti, ...
ACS medicinal chemistry letters 4 (12), 1238-1243, 2013
1262013
Comparing graph representations of protein structure for mining family-specific residue-based packing motifs
J Huan, D Bandyopadhyay, W Wang, J Snoeyink, J Prins, A Tropsha
Journal of Computational Biology 12 (6), 657-671, 2005
1262005
Almost-Delaunay simplices: nearest neighbor relations for imprecise points.
D Bandyopadhyay, J Snoeyink
SODA 4, 410-419, 2004
802004
Recent advances in chemoinformatics
DK Agrafiotis, D Bandyopadhyay, JK Wegner, H van Vlijmen
Journal of chemical information and modeling 47 (4), 1279-1293, 2007
782007
Structure‐based function inference using protein family‐specific fingerprints
D Bandyopadhyay, J Huan, J Liu, J Prins, J Snoeyink, W Wang, ...
Protein Science 15 (6), 1537-1543, 2006
522006
Distance-based identification of structure motifs in proteins using constrained frequent subgraph mining
J Huan, D Bandyopadhyay, J Prins, J Snoeyink, A Tropsha, W Wang
Computational Systems Bioinformatics, 227-238, 2006
322006
Radial clustergrams: visualizing the aggregate properties of hierarchical clusters
DK Agrafiotis, D Bandyopadhyay, M Farnum
Journal of chemical information and modeling 47 (1), 69-75, 2007
302007
Stochastic proximity embedding: methods and applications
DK Agrafiotis, H Xu, F Zhu, D Bandyopadhyay, P Liu
Molecular informatics 29 (11), 758-770, 2010
292010
Discovery and lead-optimization of 4, 5-dihydropyrazoles as mono-kinase selective, orally bioavailable and efficacious inhibitors of receptor interacting protein 1 (RIP1) kinase
PA Harris, N Faucher, N George, PM Eidam, BW King, GV White, ...
Journal of Medicinal Chemistry 62 (10), 5096-5110, 2019
262019
Perspectives on the discovery of small-molecule modulators for epigenetic processes
Q Lu, AM Quinn, MP Patel, SF Semus, AP Graves, D Bandyopadhyay, ...
Journal of biomolecular screening 17 (5), 555-571, 2012
192012
Heterocyclic amides as kinase inhibitors
JU Jeong
US Patent 9,624,202, 2017
182017
Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL
D Bandyopadhyay, J Snoeyink
Computational Geometry 38 (1-2), 4-15, 2007
182007
A self‐organizing algorithm for molecular alignment and pharmacophore development
D Bandyopadhyay, DK Agrafiotis
Journal of computational chemistry 29 (6), 965-982, 2008
172008
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development
D Bandyopadhyay, J Huan, J Prins, J Snoeyink, W Wang, A Tropsha
Journal of computer-aided molecular design 23 (11), 773-784, 2009
152009
On the Effects of Permuted Input on Conformational Sampling of Drug‐like Molecules: an Evaluation of Stochastic Proximity Embedding
DK Agrafiotis, D Bandyopadhyay, G Carta, AJS Knox, DG Lloyd
Chemical Biology & Drug Design 70 (2), 123-133, 2007
132007
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