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Aziz Khan
Aziz Khan
Stanford Cancer Institute, Stanford University
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
JASPAR 2020: update of the open-access database of transcription factor binding profiles
O Fornes, JA Castro-Mondragon, A Khan, R van der Lee, X Zhang, ...
Nucleic acids research, 2019
17502019
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
16272018
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles
JA Castro-Mondragon, R Riudavets-Puig, I Rauluseviciute, ...
Nucleic acids research 50 (D1), D165-D173, 2022
11172022
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
8472018
Intervene: a tool for intersection and visualization of multiple gene or genomic region sets
A Khan, A Mathelier
BMC bioinformatics 18, 1-8, 2017
4032017
The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
3932020
dbSUPER: a database of super-enhancers in mouse and human genome
A Khan, X Zhang
Nucleic acids research 44 (D1), D164-D171, 2016
3722016
Changing scientific meetings for the better
S Sarabipour, A Khan, YFS Seah, AD Mwakilili, FN Mumoki, PJ Sáez, ...
Nature Human Behaviour 5 (3), 296-300, 2021
1362021
A map of direct TF–DNA interactions in the human genome
M Gheorghe, GK Sandve, A Khan, J Chčneby, B Ballester, A Mathelier
Nucleic acids research 47 (4), e21-e21, 2019
872019
Modeling RNA-binding protein specificity in vivo by precisely registering protein-RNA crosslink sites
H Feng, S Bao, MA Rahman, SM Weyn-Vanhentenryck, A Khan, J Wong, ...
Molecular cell 74 (6), 1189-1204. e6, 2019
862019
High OGT activity is essential for MYC-driven proliferation of prostate cancer cells
HM Itkonen, A Urbanucci, SES Martin, A Khan, A Mathelier, B Thiede, ...
Theranostics 9 (8), 2183, 2019
702019
UniBind: maps of high-confidence direct TF-DNA interactions across nine species
RR Puig, P Boddie, A Khan, JA Castro-Mondragon, A Mathelier
BMC Genomics 22 (482), 2021
552021
Evaluating features of scientific conferences: A call for improvements
S Sarabipour, B Schwessinger, FN Mumoki, AD Mwakilili, A Khan, ...
BioRxiv, 2020.04. 02.022079, 2020
512020
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
I Rauluseviciute, R Riudavets-Puig, R Blanc-Mathieu, ...
Nucleic Acids Research 52 (D1), D174-D182, 2024
482024
Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers
A Khan, A Mathelier, X Zhang
Epigenetics 13 (9), 910-922, 2018
482018
MITI Minimum Information guidelines for highly multiplexed tissue images
D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ...
Nature Methods 19 (3), 262-267, 2022
432022
Adaptive watermark strength selection using particle swarm optimization
M Ishtiaq, B Sikandar, MA Jaffar, A Khan
ICIC Express Letters 4 (5), 1-6, 2010
422010
Molecular classification and biomarkers of clinical outcome in breast ductal carcinoma in situ: Analysis of TBCRC 038 and RAHBT cohorts
SH Strand, B Rivero-Gutiérrez, KE Houlahan, JA Seoane, LM King, ...
Cancer cell 40 (12), 1521-1536. e7, 2022
36*2022
Deterministic evolution and stringent selection during preneoplasia
K Karlsson, MJ Przybilla, E Kotler, A Khan, H Xu, K Karagyozova, ...
Nature 618 (7964), 383-393, 2023
34*2023
JASPAR RESTful API: accessing JASPAR data from any programming language
A Khan, A Mathelier
Bioinformatics 34 (9), 1612-1614, 2018
192018
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Articles 1–20