Vincent Daubin
Vincent Daubin
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
JM Aury, O Jaillon, L Duret, B Noel, C Jubin, BM Porcel, B Ségurens, ...
Nature 444 (7116), 171-178, 2006
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria
E Lerat, V Daubin, NA Moran
PLoS biology 1 (1), e19, 2003
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ...
Genome research 17 (1), 7-15, 2007
Evolutionary origins of genomic repertoires in bacteria
E Lerat, V Daubin, H Ochman, NA Moran
PLoS biology 3 (5), e130, 2005
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history
V Daubin, M Gouy, G Perriere
Genome research 12 (7), 1080-1090, 2002
Phylogenetics and the cohesion of bacterial genomes
V Daubin, NA Moran, H Ochman
Science 301 (5634), 829-832, 2003
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli
V Daubin, H Ochman
Genome research 14 (6), 1036-1042, 2004
Genome-scale coestimation of species and gene trees
B Boussau, GJ Szöllősi, L Duret, M Gouy, E Tannier, V Daubin
Genome research 23 (2), 323-330, 2013
The inference of gene trees with species trees
GJ Szöllősi, E Tannier, V Daubin, B Boussau
Systematic biology 64 (1), e42-e62, 2015
Examining bacterial species under the specter of gene transfer and exchange
H Ochman, E Lerat, V Daubin
Proceedings of the National Academy of Sciences 102 (suppl_1), 6595-6599, 2005
Dealing with incongruence in phylogenomic analyses
N Galtier, V Daubin
Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008
GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands
F Lassalle, S Périan, T Bataillon, X Nesme, L Duret, V Daubin
PLoS genetics 11 (2), e1004941, 2015
The source of laterally transferred genes in bacterial genomes
V Daubin, E Lerat, G Perričre
Genome biology 4, 1-12, 2003
Efficient exploration of the space of reconciled gene trees
GJ Szöllősi, W Rosikiewicz, B Boussau, E Tannier, V Daubin
Systematic biology 62 (6), 901-912, 2013
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse?
S Gribaldo, AM Poole, V Daubin, P Forterre, C Brochier-Armanet
Nature Reviews Microbiology 8 (10), 743-752, 2010
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin
Proceedings of the national academy of sciences 109 (43), 17513-17518, 2012
Databases of homologous gene families for comparative genomics
S Penel, AM Arigon, JF Dufayard, AS Sertier, V Daubin, L Duret, M Gouy, ...
BMC bioinformatics 10, 1-13, 2009
Models, algorithms and programs for phylogeny reconciliation
JP Doyon, V Ranwez, V Daubin, V Berry
Briefings in bioinformatics 12 (5), 392-400, 2011
Reductive genome evolution at both ends of the bacterial population size spectrum
B Batut, C Knibbe, G Marais, V Daubin
Nature Reviews Microbiology 12 (12), 841-850, 2014
Lateral gene transfer as a support for the tree of life
SS Abby, E Tannier, M Gouy, V Daubin
Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012
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