| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 920 | 2013 |
| clusterMaker: a multi-algorithm clustering plugin for Cytoscape JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ... BMC bioinformatics 12 (1), 1-14, 2011 | 527 | 2011 |
| Genetic correction of Huntington's disease phenotypes in induced pluripotent stem cells MC An, N Zhang, G Scott, D Montoro, T Wittkop, S Mooney, S Melov, ... Cell stem cell 11 (2), 253-263, 2012 | 400 | 2012 |
| Partitioning biological data with transitivity clustering T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ... Nature methods 7 (6), 419-420, 2010 | 130 | 2010 |
| Large scale clustering of protein sequences with FORCE-A layout based heuristic for weighted cluster editing T Wittkop, J Baumbach, FP Lobo, S Rahmann BMC bioinformatics 8 (1), 1-12, 2007 | 101 | 2007 |
| Exact and heuristic algorithms for weighted cluster editing S Rahmann, T Wittkop, J Baumbach, M Martin, A Truss, S Böcker Computational Systems Bioinformatics: (Volume 6), 391-401, 2007 | 94 | 2007 |
| Comprehensive cluster analysis with Transitivity Clustering T Wittkop, D Emig, A Truss, M Albrecht, S Böcker, J Baumbach Nature protocols 6 (3), 285-295, 2011 | 67 | 2011 |
| Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet J Baumbach, T Wittkop, CK Kleindt, A Tauch Nature Protocols 4 (6), 992-1005, 2009 | 50 | 2009 |
| CoryneRegNet 3.0—an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli J Baumbach, T Wittkop, K Rademacher, S Rahmann, K Brinkrolf, A Tauch Journal of biotechnology 129 (2), 279-289, 2007 | 38 | 2007 |
| CoryneRegNet 2: an integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes J Baumbach, K Brinkrolf, T Wittkop, A Tauch, S Rahmann Journal of Integrative Bioinformatics 3 (2), 1-13, 2006 | 23* | 2006 |
| Density parameter estimation for finding clusters of homologous proteins—tracing actinobacterial pathogenicity lifestyles R Röttger, P Kalaghatgi, P Sun, SC Soares, V Azevedo, T Wittkop, ... Bioinformatics 29 (2), 215-222, 2013 | 19 | 2013 |
| CoryneRegNet 2: an integrative bioinformatics approach for reconstruction and comparison of transcriptional regulatory networks in prokaryotes J Baumbach, K Brinkrolf, T Wittkop, A Tauch, S Rahmann Journal of Integrative Bioinformatics 3 (2), 1-13, 2006 | 18 | 2006 |
| STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation T Wittkop, E TerAvest, US Evani, KM Fleisch, AE Berman, C Powell, ... BMC bioinformatics 14 (1), 1-10, 2013 | 17 | 2013 |
| Extension and robustness of transitivity clustering for protein–protein interaction network analysis T Wittkop, S Rahmann, R Röttger, S Böcker, J Baumbach Internet Mathematics 7 (4), 255-273, 2011 | 14 | 2011 |
| Die multiplikative quadratische Norm fur den Grothendieck-Witt-Ring T Wittkop Master’s thesis, Universität Bielefeld, 2006 | 7 | 2006 |
| Online transitivity clustering of biological data with missing values R Röttger, C Kreutzer, TD Vu, T Wittkop, J Baumbach German Conference on Bioinformatics 2012, 2012 | 5 | 2012 |
| Efficient online transcription factor binding site adjustment by integrating transitive graph projection with MoRAine 2.0 T Wittkop, S Rahmann, J Baumbach Journal of Integrative Bioinformatics 7 (3), 28-38, 2010 | 5 | 2010 |
| DEFOG: discrete enrichment of functionally organized genes T Wittkop, AE Berman, KM Fleisch, SD Mooney Integrative Biology 4 (7), 795-804, 2012 | 4 | 2012 |
| Transitivity Clustering: Clustering biological data by unraveling hidden transitive substructures T Wittkop Suedwestdeutscher Verlag fuer Hochschulschriften, 2010 | 2 | 2010 |
| Genome and proteome annotation using automatically recognized concepts and functional networks. A Bivol, T Wittkop, D Davis, SD Mooney AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits …, 2013 | | 2013 |
