| SOMDE: a scalable method for identifying spatially variable genes with self-organizing map M Hao, K Hua, X Zhang Bioinformatics 37 (23), 4392-4398, 2021 | 42 | 2021 |
| hECA: The cell-centric assembly of a cell atlas S Chen, Y Luo, H Gao, F Li, Y Chen, J Li, R You, M Hao, H Bian, X Xi, ... Iscience 25 (5), 2022 | 23 | 2022 |
| HGC: fast hierarchical clustering for large-scale single-cell data Z Zou, K Hua, X Zhang Bioinformatics 37 (21), 3964-3965, 2021 | 17 | 2021 |
| Multifaceted spatial and functional zonation of cardiac cells in adult human heart L Chen, K Hua, N Zhang, J Wang, J Meng, Z Hu, H Gao, F Li, Y Chen, ... Circulation 145 (4), 315-318, 2022 | 9 | 2022 |
| DeepCAGE: incorporating transcription factors in genome-wide prediction of chromatin accessibility Q Liu, K Hua, X Zhang, WH Wong, R Jiang Genomics, Proteomics and Bioinformatics 20 (3), 496-507, 2022 | 8 | 2022 |
| VPAC: Variational projection for accurate clustering of single-cell transcriptomic data S Chen, K Hua, H Cui, R Jiang BMC bioinformatics 20, 139-151, 2019 | 8 | 2019 |
| Toward a unified information framework for cell atlas assembly S Chen, Y Luo, H Gao, F Li, J Li, Y Chen, R You, H Lv, K Hua, R Jiang, ... National Science Review 9 (3), nwab179, 2022 | 7 | 2022 |
| A case study on the detailed reproducibility of a Human Cell Atlas project K Hua, X Zhang Quantitative Biology 7 (2), 162-169, 2019 | 7 | 2019 |
| An experiment on ab initio discovery of biological knowledge from scRNA-Seq data using machine learning N Shah, J Li, F Li, W Chen, H Gao, S Chen, K Hua, X Zhang Patterns 1 (5), 2020 | 6 | 2020 |
| Estimating the total genome length of a metagenomic sample using k-mers K Hua, X Zhang BMC genomics 20, 93-101, 2019 | 4 | 2019 |
| NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks Z Wei, K Hua, L Wei, S Ma, R Jiang, X Zhang, Y Li, WH Wong, X Wang Proceedings of the National Academy of Sciences 120 (15), e2216698120, 2023 | 2 | 2023 |
| Comprehensive simulation of metagenomic sequencing data with non‐uniform sampling distribution S Liu, K Hua, S Chen, X Zhang Quantitative Biology 6 (2), 175-185, 2018 | 2 | 2018 |
| A human ensemble cell atlas (hECA) enables in data cell sorting S Chen, Y Luo, H Gao, F Li, J Li, Y Chen, R You, M Hao, H Bian, X Xi, ... bioRxiv, 2021.07. 21.453289, 2021 | 1 | 2021 |
| NeuronMotif: Deciphering transcriptional cis-regulatory codes from deep neural networks Z Wei, K Hua, L Wei, S Ma, R Jiang, Y Li, WH Wong, X Wang bioRxiv, 2021.02. 10.430606, 2021 | 1 | 2021 |
| A General Framework for Representing and Annotating Multifaceted Cell Heterogeneity in Human Cell Atlas H Gao, K Hua, S Chen, Q Yin, R Jiang, X Zhang bioRxiv, 2021 | 1 | 2021 |
| A single-cell atlas enables mapping of homeostatic cellular shifts in the adult human breast AD Reed, S Pensa, A Steif, J Stenning, DJ Kunz, LJ Porter, K Hua, P He, ... Nature Genetics, 1-11, 2024 | | 2024 |
| uniHEART: An Ensemble Atlas of Cardiac Cells Provides Multifaceted Portraits of the Human Heart X Zhang, Y Chen, K Hua, S Xu, R You, M Hao, W Li, L Wei, J Jia, X Xi, ... | | 2023 |
| SIP: An Interchangeable Pipeline for scRNA-seq Data Processing S Chen, Z Wei, Y Chen, K Hua, W Zhang, C Liu, H Gao, H Sun, Z Wang, ... bioRxiv, 456772, 2018 | | 2018 |
| The 7th National Conference on Bioinformatics and Systems Biology of China Z Sun, K Hua, X Zhang, FB Guo, J Huang Quantitative Biology 5 (2), 199-201, 2017 | | 2017 |
Xuegong ZhangTsinghua UniversityVerified email at tsinghua.edu.cn
