Aarash Bordbar
Aarash Bordbar
Sinopia Biosciences
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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature Protocols 6 (9), 1290-1307, 2011
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
Constraint-based models predict metabolic and associated cellular functions
A Bordbar, JM Monk, ZA King, BO Palsson
Nature Reviews Genetics 15 (2), 107-120, 2014
Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome
NE Lewis, X Liu, Y Li, H Nagarajan, G Yerganian, E O'Brien, A Bordbar, ...
Nature biotechnology 31 (8), 759-765, 2013
Large-scale in silico modeling of metabolic interactions between cell types in the human brain
NE Lewis, G Schramm, A Bordbar, J Schellenberger, MP Andersen, ...
Nature biotechnology 28 (12), 1279-1285, 2010
Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
A Bordbar, NE Lewis, J Schellenberger, BŘ Palsson, N Jamshidi
Molecular systems biology 6 (1), 422, 2010
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism
H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ...
Cell Systems 3 (5), 434-443. e8, 2016
A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology
A Bordbar, AM Feist, R Usaite-Black, J Woodcock, BO Palsson, I Famili
BMC systems biology 5 (1), 180, 2011
Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation
A Bordbar, ML Mo, ES Nakayasu, AC Schrimpe-Rutledge, YM Kim, ...
Molecular Systems Biology 8 (1), 2012
Multi-omic data integration enables discovery of hidden biological regularities
A Ebrahim, E Brunk, J Tan, EJ O'brien, D Kim, R Szubin, JA Lerman, ...
Nature communications 7 (1), 13091, 2016
Using the reconstructed genome‐scale human metabolic network to study physiology and pathology
A Bordbar, BO Palsson
Journal of Internal Medicine 271 (2), 131-141, 2012
Elucidating dynamic metabolic physiology through network integration of quantitative time-course metabolomics
A Bordbar, JT Yurkovich, G Paglia, O Rolfsson, ÓE Sigurjónsson, ...
Scientific reports 7 (1), 46249, 2017
Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
I Thiele, RMT Fleming, R Que, A Bordbar, D Diep, BO Palsson
PLOS ONE 7 (9), e45635, 2012
iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states
A Bordbar, N Jamshidi, BO Palsson
BMC systems biology 5 (1), 110, 2011
Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics
A Bordbar, D McCloskey, DC Zielinski, N Sonnenschein, N Jamshidi, ...
Cell Systems 1 (4), 283-292, 2015
Biomarkers defining the metabolic age of red blood cells during cold storage
G Paglia, A D’Alessandro, Ó Rolfsson, ÓE Sigurjónsson, A Bordbar, ...
Blood 128 (13), e43-e50, 2016
Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism
DC Zielinski, N Jamshidi, AJ Corbett, A Bordbar, A Thomas, BO Palsson
Scientific reports 7, 41241, 2017
Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes
A Bordbar, PI Johansson, G Paglia, SJ Harrison, K Wichuk, ...
Transfusion 56 (4), 852-862, 2016
Citrate metabolism in red blood cells stored in additive solution‐3
A D'alessandro, T Nemkov, T Yoshida, A Bordbar, BO Palsson, ...
Transfusion 57 (2), 325-336, 2017
Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery
I Thiele, RMT Fleming, A Bordbar, J Schellenberger, BŘ Palsson
Biophysical journal 98 (10), 2072, 2010
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