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Mihaela Pertea
Mihaela Pertea
Associate Professor, Johns Hopkins University
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
GI Arabidopsis
Nature 408 (6814), 796, 2000
113272000
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg
Nature biotechnology 33 (3), 290-295, 2015
103712015
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ...
Nature 419 (6906), 498-511, 2002
55782002
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg
Nature protocols 11 (9), 1650-1667, 2016
55222016
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ...
Genome biology 9, 1-22, 2008
30312008
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science 306 (5696), 636-640, 2004
24592004
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
WH Majoros, M Pertea, SL Salzberg
Bioinformatics 20 (16), 2878-2879, 2004
17072004
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151-1156, 2005
16952005
Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
V Nene, JR Wortman, D Lawson, B Haas, C Kodira, Z Tu, B Loftus, Z Xi, ...
Science 316 (5832), 1718-1723, 2007
13632007
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
Genome biology 20, 1-13, 2019
13562019
GFF utilities: GffRead and GffCompare
G Pertea, M Pertea
F1000Research 9, 2020
12392020
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
12232009
Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis
JM Carlton, RP Hirt, JC Silva, AL Delcher, M Schatz, Q Zhao, JR Wortman, ...
Science 315 (5809), 207-212, 2007
10232007
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ...
Nature 419 (6906), 512-519, 2002
9192002
The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
BJ Loftus, E Fung, P Roncaglia, D Rowley, P Amedeo, D Bruno, ...
Science 307 (5713), 1321-1324, 2005
8692005
GeneSplicer: a new computational method for splice site prediction
M Pertea, X Lin, SL Salzberg
Nucleic acids research 29 (5), 1185-1190, 2001
7632001
Draft genome of the filarial nematode parasite Brugia malayi
E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ...
Science 317 (5845), 1756-1760, 2007
7322007
Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations
K Deng, M Pertea, A Rongvaux, L Wang, CM Durand, G Ghiaur, J Lai, ...
Nature 517 (7534), 381-385, 2015
5882015
Chromosome 2 Sequence of the Human Malaria Parasite Plasmodium falciparum
MJ Gardner, H Tettelin, DJ Carucci, LM Cummings, L Aravind, EV Koonin, ...
Science 282 (5391), 1126-1132, 1998
5761998
Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes
MJ Gardner, R Bishop, T Shah, EP De Villiers, JM Carlton, N Hall, Q Ren, ...
Science 309 (5731), 134-137, 2005
3992005
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