| A primer to frequent itemset mining for bioinformatics S Naulaerts, P Meysman, W Bittremieux, TN Vu, W Vanden Berghe, ... Briefings in Bioinformatics 16 (2), 216-231, 2015 | 154 | 2015 |
| Detection of enriched T cell epitope specificity in full T cell receptor sequence repertoires S Gielis, P Moris, W Bittremieux, N De Neuter, B Ogunjimi, K Laukens, ... Frontiers in Immunology 10, 2820, 2019 | 102* | 2019 |
| Quality control in mass spectrometry‐based proteomics W Bittremieux, DL Tabb, F Impens, A Staes, E Timmerman, L Martens, ... Mass Spectrometry Reviews 37 (5), 697-711, 2018 | 81 | 2018 |
| Proteomics standards initiative: Fifteen years of progress and future work EW Deutsch, S Orchard, PA Binz, W Bittremieux, M Eisenacher, ... Journal of Proteome Research 16 (12), 4288-4298, 2017 | 80 | 2017 |
| Auto-deconvolution and molecular networking of gas chromatography–mass spectrometry data AA Aksenov, I Laponogov, Z Zhang, SLF Doran, I Belluomo, D Veselkov, ... Nature biotechnology 39 (2), 169-173, 2021 | 78* | 2021 |
| Fast open modification spectral library searching through approximate nearest neighbor indexing W Bittremieux, P Meysman, WS Noble, K Laukens Journal of Proteome Research 17 (10), 3463-3474, 2018 | 70 | 2018 |
| Machine learning applications in proteomics research: how the past can boost the future P Kelchtermans, W Bittremieux, K De Grave, S Degroeve, J Ramon, ... Proteomics 14 (4-5), 353-366, 2014 | 61 | 2014 |
| On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition N De Neuter, W Bittremieux, C Beirnaert, B Cuypers, A Mrzic, P Moris, ... Immunogenetics 70 (3), 159-168, 2018 | 56 | 2018 |
| qcML: An exchange format for quality control metrics from mass spectrometry experiments M Walzer, LE Pernas, S Nasso, W Bittremieux, S Nahnsen, ... Molecular & Cellular Proteomics 13 (8), 1905-1913, 2014 | 51 | 2014 |
| Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification P Moris, J De Pauw, A Postovskaya, S Gielis, N De Neuter, W Bittremieux, ... Briefings in Bioinformatics 22 (4), bbaa318, 2021 | 49 | 2021 |
| Computational quality control tools for mass spectrometry proteomics W Bittremieux, D Valkenborg, L Martens, K Laukens Proteomics 17 (3-4), 1600159, 2017 | 40 | 2017 |
| Grasping frequent subgraph mining for bioinformatics applications A Mrzic, P Meysman, W Bittremieux, P Moris, B Cule, B Goethals, ... BioData mining 11 (1), 20, 2018 | 38 | 2018 |
| spectrum_utils: A Python package for mass spectrometry data processing and visualization W Bittremieux Analytical Chemistry 92 (1), 659-661, 2020 | 35 | 2020 |
| Universal Spectrum Identifier for mass spectra EW Deutsch, Y Perez-Riverol, J Carver, S Kawano, L Mendoza, ... Nature Methods 18, 768–770, 2021 | 33 | 2021 |
| MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra Y Liu, A Mrzic, P Meysman, T De Vijlder, EP Romijn, D Valkenborg, ... PLOS ONE 15 (1), e0226770, 2020 | 31* | 2020 |
| Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units W Bittremieux, K Laukens, WS Noble Journal of Proteome Research 18 (10), 3792-3799, 2019 | 30 | 2019 |
| Sharing biological data: why, when, and how SL Wilson, GP Way, W Bittremieux, JP Armache, MA Haendel, ... FEBS letters 595 (7), 847-863, 2021 | 29 | 2021 |
| iMonDB: Mass spectrometry quality control through instrument monitoring W Bittremieux, H Willems, P Kelchtermans, L Martens, K Laukens, ... Journal of Proteome Research 14 (5), 2360-2366, 2015 | 26 | 2015 |
| Enhancing untargeted metabolomics using metadata-based source annotation JM Gauglitz, KA West, W Bittremieux, CL Williams, KC Weldon, ... Nature biotechnology, 1-6, 2022 | 25* | 2022 |
| Unsupervised quality assessment of mass spectrometry proteomics experiments by multivariate quality control metrics W Bittremieux, P Meysman, L Martens, D Valkenborg, K Laukens Journal of Proteome Research 15 (4), 1300-1307, 2016 | 22 | 2016 |
Kris LaukensProfessor Biodata Mining & Bioinformatics, University of AntwerpVerified email at uantwerpen.be
