| Multiple populations of artemisinin-resistant Plasmodium falciparum in Cambodia O Miotto, J Almagro-Garcia, M Manske, B MacInnis, S Campino, ... Nature genetics 45 (6), 648-655, 2013 | 542 | 2013 |
| Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing M Manske, O Miotto, S Campino, S Auburn, J Almagro-Garcia, G Maslen, ... Nature 487 (7407), 375-379, 2012 | 529 | 2012 |
| Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum A Miles, Z Iqbal, P Vauterin, R Pearson, S Campino, M Theron, K Gould, ... Genome research 26 (9), 1288-1299, 2016 | 198 | 2016 |
| Learning to count: robust estimates for labeled distances between molecular sequences JD O'Brien, VN Minin, MA Suchard Molecular biology and evolution 26 (4), 801-814, 2009 | 111 | 2009 |
| Human candidate gene polymorphisms and risk of severe malaria in children in Kilifi, Kenya: a case-control association study CM Ndila, S Uyoga, AW Macharia, G Nyutu, N Peshu, J Ojal, M Shebe, ... The Lancet Haematology 5 (8), e333-e345, 2018 | 105 | 2018 |
| Efficient depletion of host DNA contamination in malaria clinical sequencing SO Oyola, Y Gu, M Manske, TD Otto, J O'Brien, D Alcock, B MacInnis, ... Journal of clinical microbiology 51 (3), 745-751, 2013 | 80 | 2013 |
| A Genome Wide Association Study of Plasmodium falciparum Susceptibility to 22 Antimalarial Drugs in Kenya JP Wendler, J Okombo, R Amato, O Miotto, SM Kiara, L Mwai, L Pole, ... PLoS One 9 (5), e96486, 2014 | 33 | 2014 |
| Tree and rate estimation by local evaluation of heterochronous nucleotide data Z Yang, JD O'Brien, X Zheng, HQ Zhu, ZS She Bioinformatics 23 (2), 169-176, 2007 | 31 | 2007 |
| A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data JD O’Brien, X Didelot, Z Iqbal, L Amenga-Etego, B Ahiska, D Falush Genetics 197 (3), 925-937, 2014 | 27 | 2014 |
| Hydrodynamic mean-field solutions of 1D exclusion processes with spatially varying hopping rates G Lakatos, J O'Brien, T Chou Journal of Physics A: Mathematical and General 39 (10), 2253, 2006 | 27 | 2006 |
| Inferring Strain Mixture within Clinical Plasmodium falciparum Isolates from Genomic Sequence Data JD O’Brien, Z Iqbal, J Wendler, L Amenga-Etego PLoS computational biology 12 (6), e1004824, 2016 | 19 | 2016 |
| Dating the time of viral subtype divergence JD O'Brien, ZS She, MA Suchard BMC evolutionary biology 8, 1-9, 2008 | 17 | 2008 |
| The power and pitfalls of Dirichlet-multinomial mixture models for ecological count data JD O’Brien, NR Record, P Countway bioRxiv, 045468, 2016 | 14 | 2016 |
| Topological Symmetry Groups of K_ {4r+ 3} D Chambers, E Flapan, JD O'Brien arXiv preprint arXiv:0911.2794, 2009 | 14 | 2009 |
| Genome variation and meiotic recombination in Plasmodium falciparum: insights from deep sequencing of genetic crosses A Miles, Z Iqbal, P Vauterin, R Pearson, S Campino, M Theron, K Gould, ... Biorxiv, 024182, 2015 | 8 | 2015 |
| Approaches to estimating inbreeding coefficients in clinical isolates of Plasmodium falciparum from genomic sequence data JD O’Brien, L Amenga-Etego, R Li Malaria Journal 15, 1-10, 2016 | 7 | 2016 |
| Omic-style statistical clustering reveals old and new patterns in the Gulf of Maine ecosystem NR Record, JD O’Brien, K Stamieszkin, JA Runge Canadian journal of fisheries and aquatic sciences 74 (7), 973-979, 2017 | 5 | 2017 |
| Mixture model of pottery decorations from Lake Chad Basin archaeological sites reveals ancient segregation patterns JD O'Brien, K Lin, S MacEachern Proceedings of the Royal Society B: Biological Sciences 283 (1827), 20152824, 2016 | 3 | 2016 |
| Imputation estimators partially correct for model misspecification VN Minin, JD O'Brien, A Seregin Statistical Applications in Genetics and Molecular Biology 10 (1), 2011 | 3 | 2011 |
| An integrative statistical model for inferring strain admixture within clinical Plasmodium falciparum isolates JD O'Brien, Z Iqbal, L Amenga-Etego arXiv preprint arXiv:1505.08171, 2015 | 2 | 2015 |
Zamin IqbalEuropean Bioinformatics Institute - EMBLVerified email at ebi.ac.uk
