| Improved recognition of native‐like protein structures using a combination of sequence‐dependent and sequence‐independent features of proteins KT Simons, I Ruczinski, C Kooperberg, BA Fox, C Bystroff, D Baker Proteins: Structure, Function, and Bioinformatics 34 (1), 82-95, 1999 | 565 | 1999 |
| Prediction of local structure in proteins using a library of sequence-structure motifs C Bystroff, D Baker Journal of molecular biology 281 (3), 565-577, 1998 | 447 | 1998 |
| HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins. C Bystroff, V Thorsson, D Baker Journal of molecular biology 301 (1), 173, 2000 | 446 | 2000 |
| Crystal structures of Escherichia coli dihydrofolate reductase: the NADP+ holoenzyme and the folate. cntdot. NADP+ ternary complex. substrate binding and a model for the … C Bystroff, SJ Oatley, J Kraut Biochemistry 29 (13), 3263-3277, 1990 | 348 | 1990 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 325 | 2020 |
| Crystal structure of unliganded Escherichia coli dihydrofolate reductase. Ligand-induced conformational changes and cooperativity in binding C Bystroff, J Kraut Biochemistry 30 (8), 2227-2239, 1991 | 287 | 1991 |
| Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA C Bystroff, Y Shao Bioinformatics 18 (suppl_1), S54-S61, 2002 | 164 | 2002 |
| Identification of the peptide sequences within the EIIIA (EDA) segment of fibronectin that mediate integrin α9β1-dependent cellular activities AV Shinde, C Bystroff, C Wang, MG Vogelezang, PA Vincent, RO Hynes, ... Journal of Biological Chemistry 283 (5), 2858-2870, 2008 | 123 | 2008 |
| Local sequence-structure correlations in proteins C Bystroff, KT Simons, KF Han, D Baker Current Opinion in Biotechnology 7 (4), 417-421, 1996 | 106 | 1996 |
| Efficient remote homology detection using local structure Y Hou, W Hsu, ML Lee, C Bystroff Bioinformatics 19 (17), 2294-2301, 2003 | 98 | 2003 |
| Predicting interresidue contacts using templates and pathways Y Shao, C Bystroff Proteins: Structure, Function, and Bioinformatics 53 (S6), 497-502, 2003 | 98 | 2003 |
| Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE K Xia, M Manning, H Hesham, Q Lin, C Bystroff, W Colón Proceedings of the National Academy of Sciences 104 (44), 17329-17334, 2007 | 91 | 2007 |
| Macromolecular chelation as an improved mechanism of protease inhibition: structure of the ecotin‐trypsin complex. ME McGrath, T Erpel, C Bystroff, RJ Fletterick The EMBO Journal 13 (7), 1502-1507, 1994 | 91 | 1994 |
| Mining Protein Contact Maps. J Hu, X Shen, Y Shao, C Bystroff, MJ Zaki BIOKDD 2, 3-10, 2002 | 89 | 2002 |
| Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility DI Paredes, K Watters, DJ Pitman, C Bystroff, JS Dordick BMC structural biology 11 (1), 42, 2011 | 74 | 2011 |
| Mining residue contacts in proteins using local structure predictions MJ Zaki, S Jin, C Bystroff IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics) 33 …, 2003 | 71 | 2003 |
| PRISM: topologically constrained phased refinement for macromolecular crystallography D Baker, C BYsTRoFF, RJ Fletterick, DA Agard Acta Crystallographica Section D: Biological Crystallography 49 (5), 429-439, 1993 | 70 | 1993 |
| Remote homolog detection using local sequence–structure correlations Y Hou, W Hsu, ML Lee, C Bystroff PROTEINS: Structure, Function, and Bioinformatics 57 (3), 518-530, 2004 | 69 | 2004 |
| Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins X Yuan, C Bystroff Bioinformatics 21 (7), 1010-1019, 2005 | 66 | 2005 |
| Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions Y Huang, C Bystroff Bioinformatics 22 (4), 413-422, 2006 | 61 | 2006 |
David BakerUniversity of WashingtonVerified email at uw.edu
