| Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 434 | 2021 |
| High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ... Cell 185 (18), 3426-3440. e19, 2022 | 424 | 2022 |
| MSIsensor-pro: fast, accurate, and matched-normal-sample-free detection of microsatellite instability P Jia, X Yang, L Guo, B Liu, J Lin, H Liang, J Sun, C Zhang, K Ye Genomics, Proteomics and Bioinformatics 18 (1), 65-71, 2020 | 62 | 2020 |
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway X Yang, S Gao, L Guo, B Wang, Y Jia, J Zhou, Y Che, P Jia, J Lin, T Xu, ... Nature communications 12 (1), 6030, 2021 | 51 | 2021 |
| SVision: a deep learning approach to resolve complex structural variants J Lin, S Wang, PA Audano, D Meng, JI Flores, W Kosters, X Yang, P Jia, ... Nature methods 19 (10), 1230-1233, 2022 | 30 | 2022 |
| Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science 372, eabf7117 P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... | 23 | 2021 |
| MEpurity: estimating tumor purity using DNA methylation data B Liu, X Yang, T Wang, J Lin, Y Kang, P Jia, K Ye Bioinformatics 35 (24), 5298-5300, 2019 | 8 | 2019 |
| Mako: a graph-based pattern growth approach to detect complex structural variants J Lin, X Yang, W Kosters, T Xu, Y Jia, S Wang, Q Zhu, M Ryan, L Guo, ... Genomics, Proteomics and Bioinformatics 20 (1), 205-218, 2022 | 6 | 2022 |
| PVTree: A sequential pattern mining method for alignment independent phylogeny reconstruction Y Kang, X Yang, J Lin, K Ye Genes 10 (2), 73, 2019 | 6 | 2019 |
| Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet P Jia, L Dong, X Yang, B Wang, SJ Bush, T Wang, J Lin, S Wang, X Zhao, ... Genome Biology 24 (1), 277, 2023 | 5 | 2023 |
| A global survey of the transcriptome of the opium poppy (Papaver somniferum) based on single‐molecule long‐read isoform sequencing T Xu, X Yang, Y Jia, Z Li, G Tang, X Li, B Wang, T Wang, J Lin, L Guo, ... The Plant Journal 110 (2), 607-620, 2022 | 5 | 2022 |
| Comparison and benchmark of long-read based structural variant detection strategies J Lin, P Jia, S Wang, K Ye bioRxiv, 2022.08. 09.503274, 2022 | 2 | 2022 |
| Long read sequencing reveals sequential complex rearrangements driven by Hepatitis B virus integration S Wang, J Lin, X Yang, Z Li, T Xu, P Jia, T Wang, B Wang, L Hu, K Ye bioRxiv, 2021.12. 09.471697, 2021 | 2 | 2021 |
| Comparison and benchmark of structural variants detected from long read and long-read assembly J Lin, P Jia, S Wang, W Kosters, K Ye Briefings in Bioinformatics 24 (4), bbad188, 2023 | 1 | 2023 |
| SVision: A deep learning approach to resolve complex structural variants K Ye, J Lin, S Wang, P Audano, J Flores, W Kosters, X Yang, P Jia, ... | 1 | 2022 |
| De novo and somatic structural variant discovery with SVision-pro S Wang, J Lin, P Jia, T Xu, X Li, Y Liu, D Xu, SJ Bush, D Meng, K Ye Nature Biotechnology, 1-5, 2024 | | 2024 |
| SVision-pro: comparative sequence-to-image representation and instance segmentation for de novo and somatic structural variant discovery K Ye, S Wang, J Lin, P Jia, T Xu, DY Meng | | 2023 |
| Structural Variant Detection J Lin | | |
Peng JiaXi'an Jiaotong UniversityVerified email at stu.xjtu.edu.cn
