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Qian Xu
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scTenifoldKnk: an efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation
D Osorio, Y Zhong, G Li, Q Xu, Y Yang, Y Tian, RS Chapkin, JZ Huang, ...
Patterns 3 (3), 2022
20*2022
Crystal structure of the choline-binding protein CbpJ from Streptococcus pneumoniae
Q Xu, JW Zhang, Y Chen, Q Li, YL Jiang
Biochemical and biophysical research communications 514 (4), 1192-1197, 2019
152019
Hepatocyte Adenosine Kinase Promotes Excessive Fat Deposition and Liver Inflammation
CW Honggui Li, Juan Zheng, Qian Xu, Yongjian Yang, Jing Zhou, Xinlei Guo ...
Gastroenterology, 2022
11*2022
scTenifoldXct: a semi-supervised method for predicting cell-cell interactions and mapping cellular communication graphs
Y Yang, G Li, Y Zhong, Q Xu, YT Lin, C Roman-Vicharra, RS Chapkin, ...
Cell Systems 14 (4), 302-311. e4, 2023
102023
Association of pyroptosis and severeness of COVID-19 as revealed by integrated single-cell transcriptome data analysis
Q Xu, Y Yang, X Zhang, JJ Cai
ImmunoInformatics 6, 100013, 2022
72022
Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks
Y Yang, G Li, Y Zhong, Q Xu, BJ Chen, YT Lin, RS Chapkin, JJ Cai
Nucleic Acids Research 51 (13), 6578-6592, 2023
42023
scInTime: a computational method leveraging single-cell trajectory and gene regulatory networks to identify master regulators of cellular differentiation
Q Xu, G Li, D Osorio, Y Zhong, Y Yang, YT Lin, X Zhang, JJ Cai
Genes 13 (2), 371, 2022
42022
Interpretable modeling of time-resolved single-cell gene–protein expression with CrossmodalNet
Y Yang, YT Lin, G Li, Y Zhong, Q Xu, JJ Cai
Briefings in Bioinformatics 24 (6), bbad342, 2023
2023
Interpretable modeling of time-resolved single-cell gene-protein expression using CrossmodalNet
Y Yang, YT Lin, G Li, Y Zhong, Q Xu, JJ Cai
bioRxiv, 2023.05. 16.541011, 2023
2023
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