Mukul S. Bansal
Mukul S. Bansal
Associate Professor of Computer Science and Engineering, University of Connecticut
Verified email at - Homepage
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Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
MS Bansal, EJ Alm, M Kellis
Bioinformatics 28 (12), i283-i291, 2012
DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony
A Wehe, MS Bansal, JG Burleigh, O Eulenstein
Bioinformatics 24 (13), 1540-1541, 2008
Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees
JG Burleigh, MS Bansal, O Eulenstein, S Hartmann, A Wehe, TJ Vision
Systematic Biology 60 (2), 117-125, 2011
TreeFix: statistically informed gene tree error correction using species trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Systematic biology 62 (1), 110-120, 2013
Robinson-foulds supertrees
MS Bansal, JG Burleigh, O Eulenstein, D Fernández-Baca
Algorithms for molecular biology 5, 1-12, 2010
iGTP: a software package for large-scale gene tree parsimony analysis
R Chaudhary, MS Bansal, A Wehe, D Fernández-Baca, O Eulenstein
BMC bioinformatics 11, 1-7, 2010
Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees
YC Wu, MD Rasmussen, MS Bansal, M Kellis
Genome research 24 (3), 475-486, 2014
RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss
MS Bansal, M Kellis, M Kordi, S Kundu
Bioinformatics 34 (18), 3214-3216, 2018
Reconciliation Revisted: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss
MS Bansal, EJ Alm, M Kellis
RECOMB 2013, 1-13, 2013
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
MS Bansal, JG Burleigh, O Eulenstein
BMC bioinformatics 11, 1-9, 2010
Improved gene tree error correction in the presence of horizontal gene transfer
MS Bansal, YC Wu, EJ Alm, M Kellis
Bioinformatics 31 (8), 1211-1218, 2015
Heuristics for the Gene-Duplication Problem: A Θ(n) Speed-Up for the Local Search
MS Bansal, JG Burleigh, O Eulenstein, A Wehe
Research in Computational Molecular Biology: 11th Annual International …, 2007
Pareto-optimal phylogenetic tree reconciliation
R Libeskind-Hadas, YC Wu, MS Bansal, M Kellis
Bioinformatics 30 (12), i87-i95, 2014
The multiple gene duplication problem revisited
MS Bansal, O Eulenstein
Bioinformatics 24 (13), i132-i138, 2008
Improved fully polynomial time approximation scheme for the 0-1 multiple-choice knapsack problem
M Bansal, V Venkaiah
International Institute of Information Technology Tech Report, 1-9, 2004
Comparing and aggregating partially resolved trees
MS Bansal, J Dong, D Fernández-Baca
Theoretical Computer Science, 2011
Systematic inference of highways of horizontal gene transfer in prokaryotes
MS Bansal, G Banay, TJ Harlow, JP Gogarten, R Shamir
Bioinformatics 29 (5), 571-579, 2013
Locating large-scale gene duplication events through reconciled trees: implications for identifying ancient polyploidy events in plants
JG Burleigh, MS Bansal, A Wehe, O Eulenstein
Journal of Computational Biology 16 (8), 1071-1083, 2009
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