| Isolation of an autotrophic ammonia-oxidizing marine archaeon M Könneke, AE Bernhard, JR de La Torre, CB Walker, JB Waterbury, ... Nature 437 (7058), 543-546, 2005 | 3185 | 2005 |
| A PCR Assay To Discriminate Human and Ruminant Feces on the Basis of Host Differences in Bacteroides-Prevotella Genes Encoding 16S rRNA AE Bernhard, KG Field Applied and environmental microbiology 66 (10), 4571-4574, 2000 | 862 | 2000 |
| Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes AE Bernhard, KG Field Applied and environmental microbiology 66 (4), 1587-1594, 2000 | 677 | 2000 |
| The nitrogen cycle: processes A Bernhard Players, and Human 3 (10), 25, 2010 | 409 | 2010 |
| Host Distributions of Uncultivated Fecal Bacteroidales Bacteria Reveal Genetic Markers for Fecal Source Identification LK Dick, AE Bernhard, TJ Brodeur, JW Santo Domingo, JM Simpson, ... Applied and environmental microbiology 71 (6), 3184-3191, 2005 | 391 | 2005 |
| Loss of diversity of ammonia‐oxidizing bacteria correlates with increasing salinity in an estuary system AE Bernhard, T Donn, AE Giblin, DA Stahl Environmental Microbiology 7 (9), 1289-1297, 2005 | 308 | 2005 |
| Abundance of Ammonia-Oxidizing Archaea and Bacteria along an Estuarine Salinity Gradient in Relation to Potential Nitrification Rates AE Bernhard, ZC Landry, A Blevins, JR de la Torre, AE Giblin, DA Stahl Applied and Environmental Microbiology 76 (4), 1285-1289, 2010 | 247 | 2010 |
| Functionally distinct communities of ammonia‐oxidizing bacteria along an estuarine salinity gradient AE Bernhard, J Tucker, AE Giblin, DA Stahl Environmental microbiology 9 (6), 1439-1447, 2007 | 195 | 2007 |
| Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays S El Fantroussi, H Urakawa, AE Bernhard, JJ Kelly, PA Noble, H Smidt, ... Applied and Environmental Microbiology 69 (4), 2377-2382, 2003 | 153 | 2003 |
| Molecular approaches to microbiological monitoring: fecal source detection KG Field, AE Bernhard, TJ Brodeur Coastal Monitoring through Partnerships: Proceedings of the Fifth Symposium …, 2003 | 146 | 2003 |
| Distribution and diversity of archaeal and bacterial ammonia oxidizers in salt marsh sediments NS Moin, KA Nelson, A Bush, AE Bernhard Applied and Environmental Microbiology 75 (23), 7461-7468, 2009 | 141 | 2009 |
| Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries AE Bernhard, D Colbert, J McManus, KG Field FEMS microbiology ecology 52 (1), 115-128, 2005 | 139 | 2005 |
| Application of a rapid method for identifying fecal pollution sources in a multi-use estuary AE Bernhard, T Goyard, MT Simonich, KG Field Water Research 37 (4), 909-913, 2003 | 131 | 2003 |
| Estuarine nitrifiers: new players, patterns and processes AE Bernhard, A Bollmann Estuarine, coastal and shelf science 88 (1), 1-11, 2010 | 110 | 2010 |
| Wetland management using microbial indicators H Urakawa, AE Bernhard Ecological Engineering 108, 456-476, 2017 | 66 | 2017 |
| Nitrogen limitation of phytoplankton in a shallow embayment in northern Puget Sound AE Bernhard, ER Peele Estuaries 20, 759-769, 1997 | 56 | 1997 |
| Archaeal Diversity and the Prevalence of Crenarchaeota in Salt Marsh Sediments KA Nelson, NS Moin, AE Bernhard Applied and environmental microbiology 75 (12), 4211-4215, 2009 | 42 | 2009 |
| Differential responses of ammonia-oxidizing archaea and bacteria to long-term fertilization in a New England salt marsh X Peng, E Yando, E Hildebrand, C Dwyer, A Kearney, A Waciega, ... Frontiers in microbiology 3, 445, 2013 | 40 | 2013 |
| Spatial and temporal variability of nitrification potential and ammonia-oxidizer abundances in Louisiana salt marshes JM Marton, BJ Roberts, AE Bernhard, AE Giblin Estuaries and coasts 38, 1824-1837, 2015 | 32 | 2015 |
| Increased variability of microbial communities in restored salt marshes nearly 30 years after tidal flow restoration AE Bernhard, D Marshall, L Yiannos Estuaries and Coasts 35, 1049-1059, 2012 | 24 | 2012 |
