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Holli-Joi Martin
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Binding of BRACO19 to a telomeric G-quadruplex DNA probed by all-atom molecular dynamics simulations with explicit solvent
B Machireddy, HJ Sullivan, C Wu
Molecules 24 (6), 1010, 2019
502019
Binding of Telomestatin, TMPyP4, BSU6037, and BRACO19 to a Telomeric G-Quadruplex–Duplex Hybrid Probed by All-Atom Molecular Dynamics Simulations with Explicit Solvent
HJ Sullivan, C Readmond, C Radicella, V Persad, TJ Fasano, C Wu
ACS omega 3 (11), 14788-14806, 2018
382018
Three-dimensional structure of RNA monomeric G-quadruplex containing ALS and FTD related G4C2 repeat and its binding with TMPyP4 probed by homology modeling based on …
K Mulholland, HJ Sullivan, J Garner, J Cai, B Chen, C Wu
ACS chemical neuroscience 11 (1), 57-75, 2019
192019
Conserved coronavirus proteins as targets of broad-spectrum antivirals
CC Melo-Filho, T Bobrowski, HJ Martin, Z Sessions, KI Popov, ...
Antiviral Research 204, 105360, 2022
182022
Molecular dynamics study on the binding of an anticancer DNA G-quadruplex stabilizer, CX-5461, to human telomeric, c-KIT1, and c-Myc G-quadruplexes and a DNA duplex
HJ Sullivan, B Chen, C Wu
Journal of chemical information and modeling 60 (10), 5203-5224, 2020
152020
To probe full and partial activation of human peroxisome proliferator-activated receptors by pan-agonist chiglitazar using molecular dynamics simulations
HJ Sullivan, X Wang, S Nogle, S Liao, C Wu
PPAR research 2020, 2020
122020
Molecular dynamics simulation of biased agonists at the dopamine D2 receptor suggests the mechanism of receptor functional selectivity
D Montgomery, A Campbell, HJ Sullivan, C Wu
Journal of Biomolecular Structure and Dynamics 37 (12), 3206-3225, 2019
122019
MolPredictX: Online biological activity predictions by machine learning models
MT Scotti, C Herrera-Acevedo, R Menezes, HJ Martin, E Muratov, ...
Molecular Informatics, 2022
112022
Binding Interactions of Ergotamine and Dihydroergotamine to 5-Hydroxytryptamine Receptor 1B (5-HT1b) Using Molecular Dynamics Simulations and Dynamic …
HJ Sullivan, A Tursi, K Moore, A Campbell, C Floyd, C Wu
Journal of chemical information and modeling 60 (3), 1749-1765, 2020
92020
Targeted protein degradation: advances, challenges, and prospects for computational methods
B Mostofian, HJ Martin, A Razavi, S Patel, B Allen, W Sherman, ...
Journal of Chemical Information and Modeling 63 (17), 5408-5432, 2023
72023
To probe the binding pathway of a selective compound (D089-0563) to c-MYC Pu24 G-quadruplex using free ligand binding simulations and Markov state model analysis
B Chen, G Fountain, HJ Sullivan, N Paradis, C Wu
Physical Chemistry Chemical Physics 22 (39), 22567-22583, 2020
72020
Praemonitus praemunitus: can we forecast and prepare for future viral disease outbreaks?
Z Sessions, T Bobrowski, HJ Martin, JMT Beasley, A Kothari, T Phares, ...
FEMS Microbiology Reviews, fuad048, 2023
4*2023
Small Molecule Antiviral Compound Collection (SMACC): a database to support the discovery of broad-spectrum antiviral drug molecules.
AT Holli-Joi Martin, Cleber Melo-Filho, Daniel Korn, Rich Eastman, Ganesha ...
bioRxiv, https://doi.org/10.1101/2022.07.09.49939, 2022
22022
Small molecule antiviral compound collection (SMACC): A comprehensive, highly curated database to support the discovery of broad-spectrum antiviral drug molecules
HJ Martin, CC Melo-Filho, D Korn, RT Eastman, G Rai, A Simeonov, ...
Antiviral Research 217, 105620, 2023
12023
Sequence and structure conservation analysis of the key coronavirus proteins supports the feasibility of discovering broad-spectrum antiviral medications.
C Melo-Filho, T Bobrowski, HJ Martin, Z Sessions, K Popov, N Moorman, ...
12022
Developing New Dopamine D2 Receptor Agonists and Partial Agonists for Parkinson’s Disease and Schizophrenia
TM Keck, C Nguyen, E Kurtyan, B Stephanie, R Crowthers, J Tharakan, ...
The FASEB Journal 34 (S1), 1-1, 2020
12020
PregPred: an In-Silico Alternative to Animal Testing for Predicting Developmental Toxicity Potential
R Tieghi, M Rath, J Moreira-Filho, J Wellnitz, HJ Martin, K Gates, ...
2024
Pharmacokinetics Profiler (PhaKinPro): Model Development, Validation, and Implementation as a Web Tool for Triaging Compounds with Undesired Pharmacokinetics Profiles
M Rath, J Wellnitz, HJ Martin, C Melo-Filho, JE Hochuli, GM Silva, ...
Journal of Medicinal Chemistry, 2024
2024
STOPLIGHT: A Hit Scoring Calculator
J Wellnitz, HJ Martin, M Hossain, M Rath, C Fox, K Popov, T Willson, ...
2023
Novel Pharmacokinetics Profiler (PhaKinPro): Model Development, Validation, and Implementation as a Web-Tool for Triaging Compounds with Undesired PK Profiles
M Rath, J Wellnitz, HJ Martin, C Melo-Filho, J Hochuli, GM da Silva, ...
2023
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