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Barmak Mostofian
Barmak Mostofian
OpenEye Scientific
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Year
A suite of tutorials for the WESTPA rare-events sampling software [Article v1. 0]
AT Bogetti, B Mostofian, A Dickson, AJ Pratt, AS Saglam, PO Harrison, ...
Living journal of computational molecular science 1 (2), 2019
5992019
Cosolvent pretreatment in cellulosic biofuel production: effect of tetrahydrofuran-water on lignin structure and dynamics
MD Smith, B Mostofian, X Cheng, L Petridis, CM Cai, CE Wyman, ...
Green Chemistry 18 (5), 1268-1277, 2016
1292016
Mechanical properties of nanoscopic lipid domains
JD Nickels, X Cheng, B Mostofian, C Stanley, B Lindner, FA Heberle, ...
Journal of the American Chemical Society 137 (50), 15772-15780, 2015
1242015
Local phase separation of co-solvents enhances pretreatment of biomass for bioenergy applications
B Mostofian, CM Cai, MD Smith, L Petridis, X Cheng, CE Wyman, ...
Journal of the American Chemical Society 138 (34), 10869-10878, 2016
882016
A multifunctional cosolvent pair reveals molecular principles of biomass deconstruction
AS Patri, B Mostofian, Y Pu, N Ciaffone, M Soliman, MD Smith, R Kumar, ...
Journal of the American Chemical Society 141 (32), 12545-12557, 2019
642019
Simulation of a cellulose fiber in ionic liquid suggests a synergistic approach to dissolution
B Mostofian, JC Smith, X Cheng
Cellulose 21, 983-997, 2014
542014
Computational Estimation of Microsecond to Second Atomistic Folding Times
U Adhikari, B Mostofian, J Copperman, SR Subramanian, A Petersen, ...
Journal of the American Chemical Society 141 (16), 6519-6526, 2019
522019
Bacillus subtilis Lipid Extract, A Branched-Chain Fatty Acid Model Membrane
JD Nickels, S Chatterjee, B Mostofian, CB Stanley, M Ohl, P Zolnierczuk, ...
The journal of physical chemistry letters 8 (17), 4214-4217, 2017
492017
High-throughput, single-particle tracking reveals nested membrane domains that dictate KRasG12D diffusion and trafficking
Y Lee, C Phelps, T Huang, B Mostofian, L Wu, Y Zhang, K Tao, YH Chang, ...
Elife 8, e46393, 2019
482019
Interactions between ether phospholipids and cholesterol as determined by scattering and molecular dynamics simulations
J Pan, X Cheng, FA Heberle, B Mostofian, N Kučerka, P Drazba, ...
The Journal of Physical Chemistry B 116 (51), 14829-14838, 2012
422012
Statistical uncertainty analysis for small-sample, high log-variance data: Cautions for bootstrapping and Bayesian bootstrapping
B Mostofian, DM Zuckerman
Journal of Chemical Theory and Computation 15 (6), 3499-3509, 2019
35*2019
Predicting the structural basis of targeted protein degradation by integrating molecular dynamics simulations with structural mass spectrometry
T Dixon, D MacPherson, B Mostofian, T Dauzhenka, S Lotz, D McGee, ...
Nature communications 13 (1), 5884, 2022
34*2022
Molecular driving forces behind the tetrahydrofuran–Water miscibility gap
MD Smith, B Mostofian, L Petridis, X Cheng, JC Smith
The Journal of Physical Chemistry B 120 (4), 740-747, 2016
342016
Branched-chain fatty acid content modulates structure, fluidity, and phase in model microbial cell membranes
B Mostofian, T Zhuang, X Cheng, JD Nickels
The Journal of Physical Chemistry B 123 (27), 5814-5821, 2019
332019
Organosolv-water cosolvent phase separation on cellulose and its influence on the physical deconstruction of cellulose: A molecular dynamics analysis
MD Smith, X Cheng, L Petridis, B Mostofian, JC Smith
Scientific Reports 7 (1), 14494, 2017
312017
Vascular KATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides
MW Sung, Z Yang, CM Driggers, BL Patton, B Mostofian, JD Russo, ...
Proceedings of the National Academy of Sciences 118 (44), e2109441118, 2021
302021
Enhanced sampling simulation analysis of the structure of lignin in the THF–water miscibility gap
MD Smith, L Petridis, X Cheng, B Mostofian, JC Smith
Physical Chemistry Chemical Physics 18 (9), 6394-6398, 2016
302016
Structural relaxation, viscosity, and network connectivity in a hydrogen bonding liquid
S Perticaroli, B Mostofian, G Ehlers, JC Neuefeind, SO Diallo, CB Stanley, ...
Physical Chemistry Chemical Physics 19 (38), 25859-25869, 2017
292017
Replica-exchange molecular dynamics simulations of cellulose solvated in water and in the ionic liquid 1-butyl-3-methylimidazolium chloride
B Mostofian, X Cheng, JC Smith
The Journal of Physical Chemistry B 118 (38), 11037-11049, 2014
292014
Carotenoids promote lateral packing and condensation of lipid membranes
B Mostofian, QR Johnson, JC Smith, X Cheng
Physical Chemistry Chemical Physics 22 (21), 12281-12293, 2020
252020
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Articles 1–20