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Michael Bergdorf
Michael Bergdorf
Verified email at deshawresearch.com
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PPM–A highly efficient parallel particle–mesh library for the simulation of continuum systems
IF Sbalzarini, JH Walther, M Bergdorf, SE Hieber, EM Kotsalis, ...
Journal of Computational Physics 215 (2), 566-588, 2006
2322006
Billion vortex particle direct numerical simulations of aircraft wakes
P Chatelain, A Curioni, M Bergdorf, D Rossinelli, W Andreoni, ...
Computer Methods in Applied Mechanics and Engineering 197 (13-16), 1296-1304, 2008
1882008
A hybrid model for three-dimensional simulations of sprouting angiogenesis
F Milde, M Bergdorf, P Koumoutsakos
Biophysical journal 95 (7), 3146-3160, 2008
1692008
GPU accelerated simulations of bluff body flows using vortex particle methods
D Rossinelli, M Bergdorf, GH Cottet, P Koumoutsakos
Journal of Computational Physics 229 (9), 3316-3333, 2010
1542010
Anton 3: twenty microseconds of molecular dynamics simulation before lunch
DE Shaw, PJ Adams, A Azaria, JA Bank, B Batson, A Bell, M Bergdorf, ...
Proceedings of the International Conference for High Performance Computing …, 2021
1432021
Multilevel adaptive particle methods for convection-diffusion equations
M Bergdorf, GH Cottet, P Koumoutsakos
Multiscale Modeling & Simulation 4 (1), 328-357, 2005
1022005
A Lagrangian particle-wavelet method
M Bergdorf, P Koumoutsakos
Multiscale Modeling & Simulation 5 (3), 980-995, 2006
1012006
Influence of cut-off truncation and artificial periodicity of electrostatic interactions in molecular simulations of solvated ions: A continuum electrostatics study
M Bergdorf, C Peter, PH Hünenberger
The Journal of chemical physics 119 (17), 9129-9144, 2003
922003
High order finite volume methods on wavelet-adapted grids with local time-stepping on multicore architectures for the simulation of shock-bubble interactions
B Hejazialhosseini, D Rossinelli, M Bergdorf, P Koumoutsakos
Journal of Computational Physics 229 (22), 8364-8383, 2010
692010
MRAG-I2D: Multi-resolution adapted grids for remeshed vortex methods on multicore architectures
D Rossinelli, B Hejazialhosseini, W van Rees, M Gazzola, M Bergdorf, ...
Journal of Computational Physics 288, 1-18, 2015
662015
A numerical study of the stabilitiy of helical vortices using vortex methods
JH Walther, M Guenot, E Machefaux, JT Rasmussen, P Chatelain, ...
Journal of Physics: Conference Series 75 (1), 012034, 2007
652007
Direct numerical simulations of vortex rings at ReΓ= 7500
M Bergdorf, P Koumoutsakos, A Leonard
Journal of Fluid Mechanics 581, 495-505, 2007
642007
Quantum chemical benchmark databases of gold-standard dimer interaction energies
AG Donchev, AG Taube, E Decolvenaere, C Hargus, RT McGibbon, ...
Scientific data 8 (1), 55, 2021
632021
A Lagrangian particle method for reaction–diffusion systems on deforming surfaces
M Bergdorf, IF Sbalzarini, P Koumoutsakos
Journal of mathematical biology 61, 649-663, 2010
542010
Water–carbon interactions III: the influence of surface and fluid impurities
JH Walther, T Werder, RL Jaffe, P Gonnet, M Bergdorf, U Zimmerli, ...
Physical Chemistry Chemical Physics 6 (8), 1988-1995, 2004
402004
Desmond/GPU Performance as of November 2014
M Bergdorf, ET Kim, CA Rendleman, DE Shaw
DE Shaw Research Technical Report DESRES/TR—2014-01, 2014
252014
A software framework for the portable parallelization of particle-mesh simulations
IF Sbalzarini, JH Walther, B Polasek, P Chatelain, M Bergdorf, SE Hieber, ...
Euro-Par 2006 Parallel Processing: 12th International Euro-Par Conference …, 2006
162006
Desmond/GPU performance as of October 2015
M Bergdorf, S Baxter, CA Rendleman, DE Shaw
DE Shaw research, 2015
142015
Multiresolution particle methods for the simulation of growth and flow
ME Bergdorf
ETH Zurich, 2007
142007
Desmond/GPU performance as of April 2021
M Bergdorf, A Robinson-Mosher, X Guo, KH Law, DE Shaw
DE Shaw Research, Tech. Rep. DESRES/TR–2021-01, 2021
132021
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