Giuseppe Narzisi

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Bud MishraProfessor of Computer Science and MathematicsVerified email at nyu.edu
Giuseppe NicosiaUniversity of Catania, ItalyVerified email at unict.it
vincenzo cutelloProfessor of Computer Science, University of Catania, ItalyVerified email at unict.it
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
Gholson LyonInstitute for Basic Research in Developmental DisabilitiesVerified email at opwdd.ny.gov
Mario PavoneAssociate Professor in Computer Science, University of CataniaVerified email at dmi.unict.it
Venkatesh MysoreAikium Inc.Verified email at aikium.com
Han FangGenAI, MetaVerified email at fb.com
Egor DolzhenkoPacific BiosciencesVerified email at pacificbiosciences.com
Nicolas RobineDirector, Computational Biology. New York Genome CenterVerified email at nygenome.org
Kanika AroraPrincipal Computational Biologist, MSKCCVerified email at mskcc.org
Michael Wiglercold spring harbor laboratoryVerified email at cshl.edu
Rajeeva Lochan MusunuriNew York Genome CenterVerified email at nygenome.org
Andrew M. GrossInvitaeVerified email at invitae.com
Michael A EberlePacific BiosciencesVerified email at pacificbiosciences.com
Sai ChenGuardant HealthVerified email at umich.edu
Ewa A Bergmann (Grabowska)Manager, Bioinformatics at IlluminaVerified email at illumina.com
Vladimir Vacic23andMe, Inc.Verified email at 23andme.com
Marta Byrska-BishopLead Scientist, Computational Biology @ The New York Genome CenterVerified email at nygenome.org
Zihua Wangsenior research investigator, Cold Spring Harbor LaboratoryVerified email at cshl.edu

Giuseppe Narzisi

Associate Director, Computational Biology, New York Genome Center

Verified email at nygenome.org - Homepage

Genomics Next Generation Sequencing Variant Calling Sequence Assembly Computer Science


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The contribution of de novo coding mutations to autism spectrum disorder I Iossifov, BJ O’roak, SJ Sanders, M Ronemus, N Krumm, D Levy, ... Nature 515 (7526), 216-221, 2014	2769	2014
De novo gene disruptions in children on the autistic spectrum I Iossifov, M Ronemus, D Levy, Z Wang, I Hakker, J Rosenbaum, ... Neuron 74 (2), 285-299, 2012	1714	2012
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios M Byrska-Bishop, US Evani, X Zhao, AO Basile, HJ Abel, AA Regier, ... Cell 185 (18), 3426-3440. e19, 2022	657	2022
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) R Ming, R VanBuren, Y Liu, M Yang, Y Han, LT Li, Q Zhang, MJ Kim, ... Genome biology 14, 1-11, 2013	405	2013
Detection of long repeat expansions from PCR-free whole-genome sequence data E Dolzhenko, JJ Van Vugt, RJ Shaw, MA Bekritsky, M Van Blitterswijk, ... Genome research 27 (11), 1895-1903, 2017	359	2017
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ... Bioinformatics 35 (22), 4754-4756, 2019	283	2019
Accurate de novo and transmitted indel detection in exome-capture data using microassembly G Narzisi, JA O'rawe, I Iossifov, H Fang, Y Lee, Z Wang, Y Wu, GJ Lyon, ... Nature methods 11 (10), 1033-1036, 2014	244	2014
Comparing de novo genome assembly: the long and short of it G Narzisi, B Mishra PloS one 6 (4), e19175, 2011	205	2011
Reducing INDEL calling errors in whole genome and exome sequencing data H Fang, Y Wu, G Narzisi, JA ORawe, LTJ Barrón, J Rosenbaum, ... Genome medicine 6, 1-17, 2014	204	2014
Curated variation benchmarks for challenging medically relevant autosomal genes J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ... Nature biotechnology 40 (5), 672-680, 2022	168	2022
ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data E Dolzhenko, MF Bennett, PA Richmond, B Trost, S Chen, JJFA Van Vugt, ... Genome biology 21, 1-14, 2020	168	2020
A multi-objective evolutionary approach to the protein structure prediction problem V Cutello, G Narzisi, G Nicosia Journal of The Royal Society Interface 3 (6), 139-151, 2006	167	2006
Clonal selection algorithms: A comparative case study using effective mutation potentials V Cutello, G Narzisi, G Nicosia, M Pavone Artificial Immune Systems: 4th International Conference, ICARIS 2005, Banff …, 2005	166	2005
Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell genomics 2 (5), 2022	152	2022
Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons F Vezzi, G Narzisi, B Mishra PloS one 7 (12), e52210, 2012	126	2012
Indel variant analysis of short-read sequencing data with Scalpel H Fang, EA Bergmann, K Arora, V Vacic, MC Zody, I Iossifov, JA O'rawe, ... Nature protocols 11 (12), 2529-2548, 2016	125	2016
Genome-wide somatic variant calling using localized colored de Bruijn graphs G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ... Communications biology 1 (1), 20, 2018	117	2018
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study J Foox, SW Tighe, CM Nicolet, JM Zook, M Byrska-Bishop, WE Clarke, ... Nature biotechnology 39 (9), 1129-1140, 2021	103	2021
Feature-by-feature–evaluating de novo sequence assembly F Vezzi, G Narzisi, B Mishra PloS one 7 (2), e31002, 2012	82	2012
Multi-objective evolutionary optimization of agent-based models: An application to emergency response planning. G Narzisi, V Mysore, B Mishra Computational Intelligence 2006, 224-230, 2006	78	2006

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