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Daniela Puiu
Daniela Puiu
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Year
A whole-genome assembly of the domestic cow, Bos taurus
AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ...
Genome biology 10, 1-10, 2009
13562009
The MaSuRCA genome assembler
AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke
Bioinformatics 29 (21), 2669-2677, 2013
13442013
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
8882012
The genome of Cryptosporidium hominis
P Xu, G Widmer, Y Wang, LS Ozaki, JM Alves, MG Serrano, D Puiu, ...
Nature 431 (7012), 1107-1112, 2004
6742004
Draft genome sequence of the oilseed species Ricinus communis
AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ...
Nature biotechnology 28 (9), 951-956, 2010
5822010
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii
MC Luo, YQ Gu, D Puiu, H Wang, SO Twardziok, KR Deal, N Huo, T Zhu, ...
Nature 551 (7681), 498-502, 2017
5642017
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ...
Genome biology 15, 1-13, 2014
5472014
Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ...
Science 330 (6000), 86-88, 2010
5332010
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
4692010
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ...
BMC genomics 9, 1-16, 2008
4262008
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ...
Genome biology 11, 1-22, 2010
4242010
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ...
Genome research 27 (5), 787-792, 2017
3942017
Sequencing and assembly of the 22-Gb loblolly pine genome
A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ...
Genetics 196 (3), 875-890, 2014
3902014
The genomes of two key bumblebee species with primitive eusocial organization
BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ...
Genome biology 16, 1-32, 2015
3892015
Genomic signatures of evolutionary transitions from solitary to group living
KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu, T Magoc, HM Robertson, ...
Science 348 (6239), 1139-1143, 2015
3892015
Assembly of a pan-genome from deep sequencing of 910 humans of African descent
RM Sherman, J Forman, V Antonescu, D Puiu, M Daya, N Rafaels, ...
Nature genetics 51 (1), 30-35, 2019
3382019
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
3312023
Genome of the Opportunistic Pathogen Streptococcus sanguinis
P Xu, JM Alves, T Kitten, A Brown, Z Chen, LS Ozaki, P Manque, X Ge, ...
Journal of bacteriology 189 (8), 3166-3175, 2007
2972007
The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo, SL Salzberg
Gigascience 6 (11), gix097, 2017
2902017
Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation
JL Wegrzyn, JD Liechty, KA Stevens, LS Wu, CA Loopstra, ...
Genetics 196 (3), 891-909, 2014
2472014
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