Samuel K. Sheppard
Samuel K. Sheppard
Department of Biology, Oxford University, UK
Verified email at - Homepage
Cited by
Cited by
Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain
KA Jolley, CM Bliss, JS Bennett, HB Bratcher, C Brehony, FM Colles, ...
Microbiology 158 (4), 1005-1015, 2012
Campylobacter Genotyping to Determine the Source of Human Infection
SK Sheppard, JF Dallas, NJC Strachan, M MacRae, ND McCarthy, ...
Clinical Infectious Diseases 48 (8), 1072-1078, 2009
Advances in molecular ecology: tracking trophic links through predator–prey food‐webs
SK Sheppard, JD Harwood
Functional ecology 19 (5), 751-762, 2005
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter
SK Sheppard, X Didelot, G Meric, A Torralbo, KA Jolley, DJ Kelly, ...
Proceedings of the national academy of sciences 110 (29), 11923-11927, 2013
Detection of secondary predation by PCR analyses of the gut contents of invertebrate generalist predators
SK Sheppard, J Bell, KD Sunderland, J Fenlon, D Skervin, ...
Molecular Ecology 14 (14), 4461-4468, 2005
Convergence of Campylobacter species: implications for bacterial evolution
SK Sheppard, ND McCarthy, D Falush, MCJ Maiden
Science 320 (5873), 237-239, 2008
Population genomics of bacterial host adaptation
SK Sheppard, DS Guttman, JR Fitzgerald
Nature Reviews Genetics 19 (9), 549-565, 2018
CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
TR Connor, NJ Loman, S Thompson, A Smith, J Southgate, R Poplawski, ...
Microbial genomics 2 (9), e000086, 2016
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations
A McNally, Y Oren, D Kelly, B Pascoe, S Dunn, T Sreecharan, M Vehkala, ...
PLoS genetics 12 (9), e1006280, 2016
Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6
SK Sheppard, JF Dallas, M MacRae, ND McCarthy, EL Sproston, ...
International journal of food microbiology 134 (1-2), 96-103, 2009
Campylobacter epidemiology: a descriptive study reviewing 1 million cases in England and Wales between 1989 and 2011
GL Nichols, JF Richardson, SK Sheppard, C Lane, C Sarran
BMJ open 2 (4), e001179, 2012
The evolution of Campylobacter jejuni and Campylobacter coli
SK Sheppard, MCJ Maiden
Cold Spring Harbor perspectives in biology 7 (8), a018119, 2015
A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter
SK Sheppard, KA Jolley, MCJ Maiden
Genes 3 (2), 261-277, 2012
Attribution of Campylobacter Infections in Northeast Scotland to Specific Sources by Use of Multilocus Sequence Typing
NJC Strachan, FJ Gormley, O Rotariu, ID Ogden, G Miller, GM Dunn, ...
The Journal of infectious diseases 199 (8), 1205-1208, 2009
Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis
G Meric, M Miragaia, M de Been, K Yahara, B Pascoe, L Mageiros, ...
Genome biology and evolution 7 (5), 1313-1328, 2015
Host Association of Campylobacter Genotypes Transcends Geographic Variation
SK Sheppard, F Colles, J Richardson, AJ Cody, R Elson, A Lawson, ...
Applied and Environmental Microbiology 76 (15), 5269-5277, 2010
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
SC Bayliss, HA Thorpe, NM Coyle, SK Sheppard, EJ Feil
Gigascience 8 (10), giz119, 2019
Progressive genome‐wide introgression in agricultural Campylobacter coli
SK Sheppard, X Didelot, KA Jolley, AE Darling, B Pascoe, G Meric, ...
Molecular ecology 22 (4), 1051-1064, 2013
A reference pan-genome approach to comparative bacterial genomics: identification of novel epidemiological markers in pathogenic Campylobacter
G Méric, K Yahara, L Mageiros, B Pascoe, MCJ Maiden, KA Jolley, ...
PloS one 9 (3), e92798, 2014
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
SK Sheppard, L Cheng, G Meric, CPA De Haan, AK Llarena, P Marttinen, ...
Molecular ecology 23 (10), 2442-2451, 2014
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