Lenore J. Cowen

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Bonnie BergerMITVerified email at mit.edu
Noah M. DanielsAssociate Professor, Computer Science, University of Rhode IslandVerified email at cs.uri.edu
Benjamin HescottNortheastern UniversityVerified email at northeastern.edu
Samuel SledzieskiPhD Student in Computer Science, Massachusetts Institute of TehchnologyVerified email at mit.edu
Rohit SinghDuke UniversityVerified email at duke.edu
Xiaozhe HuTufts UniversityVerified email at tufts.edu
Kapil DevkotaDuke UniversityVerified email at DUKE.EDU
David PelegProfessor of Computer Science, Weizmann InstituteVerified email at weizmann.ac.il
Donna SlonimProfessor, Computer Science, Tufts University; Genetics, Grad. School of Biomedical SciencesVerified email at tufts.edu
Jonathan KingProf of Molecular bBology, MITVerified email at mit.edu
Mengfei CaoSenior Applied Scientist, AmazonVerified email at amazon.com
Arthur BradyUniversity of Maryland School of Medicine Institute for Genome SciencesVerified email at som.umaryland.edu
Philip BradleyFred Hutchinson Cancer Research CenterVerified email at fredhutch.org
Carey E. PriebeProfessor of Applied Mathematics and Statistics, Johns Hopkins UniversityVerified email at jhu.edu
Jake CrawfordUniversity of PennsylvaniaVerified email at pennmedicine.upenn.edu
Wayne GoddardClemson UniversityVerified email at clemson.edu
Jisoo ParkUniversity of California, San Diego; Tufts UniversityVerified email at ucsd.edu
Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
Ben RaphaelProfessor of Computer Science, Princeton UniversityVerified email at princeton.edu

Lenore J. Cowen

Professor of Computer Science, Tufts University

Verified email at cs.tufts.edu - Homepage

Computational Biology Computational Structural Biology Network Science Graph Algorithms Discrete Mathematics


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Network propagation: a universal amplifier of genetic associations L Cowen, T Ideker, BJ Raphael, R Sharan Nature Reviews Genetics 18 (9), 551-562, 2017	630	2017
Compact routing with minimum stretch LJ Cowen Journal of Algorithms 38 (1), 170-183, 2001	318	2001
Defective colorings of graphs in surfaces: partitions into subgraphs of bounded valency LJ Cowen, RH Cowen, DR Woodall Journal of Graph Theory 10 (2), 187-195, 1986	307	1986
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019	273	2019
Matt: local flexibility aids protein multiple structure alignment M Menke, B Berger, L Cowen PLoS computational biology 4 (1), e10, 2008	270	2008
Defective coloring revisited L Cowen, W Goddard, CE Jesurum Journal of Graph Theory 24 (3), 205-219, 1997	175	1997
Going the distance for protein function prediction: a new distance metric for protein interaction networks M Cao, H Zhang, J Park, NM Daniels, ME Crovella, LJ Cowen, B Hescott PloS one 8 (10), e76339, 2013	161	2013
betawrap: Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens P Bradley, L Cowen, M Menke, J King, B Berger Proceedings of the National Academy of Sciences 98 (26), 14819-14824, 2001	142	2001
New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence M Cao, CM Pietras, X Feng, KJ Doroschak, T Schaffner, J Park, H Zhang, ... Bioinformatics 30 (12), i219-i227, 2014	133	2014
Near-linear time construction of sparse neighborhood covers B Awerbuch, B Berger, L Cowen, D Peleg SIAM Journal on Computing 28 (1), 263-277, 1998	131	1998
BETASCAN: probable β-amyloids identified by pairwise probabilistic analysis AW Bryan Jr, M Menke, LJ Cowen, SL Lindquist, B Berger PLoS computational biology 5 (3), e1000333, 2009	128	2009
The distinguishing number of the hypercube B Bogstad, LJ Cowen Discrete Mathematics 283 (1-3), 29-35, 2004	105	2004
D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions S Sledzieski, R Singh, L Cowen, B Berger Cell Systems 12 (10), 969-982. e6, 2021	100	2021
Array-to-array transfer of an artificial nose classifier SE Stitzel, LJ Cowen, KJ Albert, DR Walt Analytical Chemistry 73 (21), 5266-5271, 2001	91	2001
Fast distributed network decompositions and covers B Awerbuch, B Berger, L Cowen, D Peleg Journal of parallel and distributed computing 39 (2), 105-114, 1996	81	1996
Compact routing with name independence M Arias, LJ Cowen, KA Laing, R Rajaraman, O Taka Proceedings of the fifteenth annual ACM symposium on Parallel algorithms and …, 2003	79	2003
Approximation algorithms for the class cover problem AH Cannon, LJ Cowen Annals of Mathematics and Artificial Intelligence 40, 215-223, 2004	77	2004
Compact roundtrip routing in directed networks LJ Cowen, CG Wagner Journal of Algorithms 50 (1), 79-95, 2004	77	2004
Compact routing on power law graphs with additive stretch A Brady, L Cowen 2006 Proceedings of the Eighth Workshop on Algorithm Engineering and …, 2006	73	2006
Contrastive learning in protein language space predicts interactions between drugs and protein targets R Singh, S Sledzieski, B Bryson, L Cowen, B Berger Proceedings of the National Academy of Sciences 120 (24), e2220778120, 2023	71	2023

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