| Searching molecular structure databases with tandem mass spectra using CSI:FingerID K Dührkop, H Shen, M Meusel, J Rousu, S Böcker Proceedings of the National Academy of Sciences 112 (41), 12580-12585, 2015 | 633 | 2015 |
| SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information K Dührkop, M Fleischauer, M Ludwig, AA Aksenov, AV Melnik, M Meusel, ... Nature methods 16 (4), 299-302, 2019 | 589 | 2019 |
| Feature-based molecular networking in the GNPS analysis environment LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ... Nature methods 17 (9), 905-908, 2020 | 488 | 2020 |
| SIRIUS: decomposing isotope patterns for metabolite identification S Böcker, MC Letzel, Z Lipták, A Pervukhin Bioinformatics 25 (2), 218-224, 2009 | 315 | 2009 |
| Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra K Dührkop, LF Nothias, M Fleischauer, R Reher, M Ludwig, MA Hoffmann, ... Nature Biotechnology 39 (4), 462-471, 2021 | 192 | 2021 |
| Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification F Von Wintzingerode, S Böcker, C Schlötelburg, NHL Chiu, N Storm, ... Proceedings of the National Academy of Sciences 99 (10), 7039-7044, 2002 | 189 | 2002 |
| Computational mass spectrometry for metabolomics: identification of metabolites and small molecules S Neumann, S Böcker Analytical and bioanalytical chemistry 398, 2779-2788, 2010 | 183 | 2010 |
| High-throughput MALDI-TOF discovery of genomic sequence polymorphisms P Stanssens, M Zabeau, G Meersseman, G Remes, Y Gansemans, ... Genome research 14 (1), 126-133, 2004 | 170 | 2004 |
| Critical assessment of small molecule identification 2016: automated methods EL Schymanski, C Ruttkies, M Krauss, C Brouard, T Kind, K Dührkop, ... Journal of cheminformatics 9 (1), 1-21, 2017 | 160 | 2017 |
| Fragmentation-based methods and systems for sequence variation detection and discovery D Van Den Boom, S Boecker US Patent 7,820,378, 2010 | 160 | 2010 |
| Fragmentation trees reloaded S Böcker, K Dührkop Journal of cheminformatics 8 (1), 5, 2016 | 156 | 2016 |
| Towards de novo identification of metabolites by analyzing tandem mass spectra S Böcker, F Rasche Bioinformatics 24 (16), i49-i55, 2008 | 153 | 2008 |
| Computing fragmentation trees from tandem mass spectrometry data F Rasche, A Svatos, RK Maddula, C Böttcher, S Böcker Analytical Chemistry 83 (4), 1243-1251, 2011 | 150 | 2011 |
| Computational mass spectrometry for small molecules K Scheubert, F Hufsky, S Böcker Journal of cheminformatics 5, 1-24, 2013 | 147 | 2013 |
| Significance estimation for large scale metabolomics annotations by spectral matching K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ... Nature Communications 8 (1), 1494, 2017 | 146 | 2017 |
| Exact algorithms for cluster editing: Evaluation and experiments S Böcker, S Briesemeister, GW Klau Algorithmica 60 (2), 316-334, 2011 | 146 | 2011 |
| Partitioning biological data with transitivity clustering T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S Böcker, ... Nature methods 7 (6), 419-420, 2010 | 130 | 2010 |
| Identifying the unknowns by aligning fragmentation trees F Rasche, K Scheubert, F Hufsky, T Zichner, M Kai, A Svatoš, S Böcker Analytical chemistry 84 (7), 3417-3426, 2012 | 127 | 2012 |
| Simple but fundamental limitations on supertree and consensus tree methods M Steel, AWM Dress, S Böcker Syst Biol 49 (2), 363-368, 2000 | 125 | 2000 |
| Unbiased Transcriptional Comparisons of Generalist and Specialist Herbivores Feeding on Progressively Defenseless Nicotiana attenuata Plants G Govind, O Mittapalli, T Griebel, S Allmann, S Böcker, IT Baldwin PLoS one 5 (1), e8735, 2010 | 117 | 2010 |
Kai DührkopPhD, Lehrstuhl Bioinformatik, Friedrich-Schiller Universität JenaVerified email at uni-jena.de
