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Sai Chen
Sai Chen
Guardant Health
Verified email at umich.edu
Title
Cited by
Cited by
Year
A reference panel of 64,976 haplotypes for genotype imputation
Nature genetics 48 (10), 1279-1283, 2016
30512016
Discovery of common and rare genetic risk variants for colorectal cancer
JR Huyghe, SA Bien, TA Harrison, HM Kang, S Chen, SL Schmit, ...
Nature genetics 51 (1), 76-87, 2019
4762019
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
2462019
ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
E Dolzhenko, MF Bennett, PA Richmond, B Trost, S Chen, JJFA Van Vugt, ...
Genome biology 21, 1-14, 2020
1542020
Paragraph: a graph-based structural variant genotyper for short-read sequence data
S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ...
Genome biology 20, 1-13, 2019
1452019
Genetic variant predictors of gene expression provide new insight into risk of colorectal cancer
SA Bien, YR Su, DV Conti, TA Harrison, C Qu, X Guo, Y Lu, D Albanes, ...
Human genetics 138, 307-326, 2019
572019
A mixed-effects model for powerful association tests in integrative functional genomics
YR Su, C Di, S Bien, L Huang, X Dong, G Abecasis, S Berndt, S Bezieau, ...
The American journal of human genetics 102 (5), 904-919, 2018
352018
Proper conditional analysis in the presence of missing data: Application to large scale meta-analysis of tobacco use phenotypes
Y Jiang, S Chen, D McGuire, F Chen, M Liu, WG Iacono, JK Hewitt, ...
PLoS genetics 14 (7), e1007452, 2018
272018
Optimal sequencing strategies for identifying disease-associated singletons
S Rashkin, G Jun, S Chen, ...
PLoS genetics 13 (6), e1006811, 2017
232017
Tissue-specific alteration of metabolic pathways influences glycemic regulation
NHJ Ng, SM Willems, J Fernandez, RS Fine, E Wheeler, J Wessel, ...
BioRxiv, 790618, 2019
102019
Improved score statistics for meta‐analysis in single‐variant and gene‐level association studies
J Yang, S Chen, G Abecasis, IAMDGC
Genetic epidemiology 42 (4), 333-343, 2018
102018
Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data
SA Bien, PL Auer, TA Harrison, C Qu, CM Connolly, PG Greenside, ...
PLoS One 12 (11), e0186518, 2017
82017
Association analysis and meta-analysis of multi-allelic variants for large-scale sequence data
Y Jiang, S Chen, X Wang, M Liu, WG Iacono, JK Hewitt, JE Hokanson, ...
Genes 11 (5), 586, 2020
62020
A method for Quantifying circulating tumor DNA level and Molecular Response using Methylome Sequencing
S Chen, K Chang, K Quinn, CY Lee, J Zhao, T Jiang, S Zhang, ...
Cancer Res 83 (7_suppl), 3123, 2023
42023
Analytical validation of a robust integrated genomic and epigenomic liquid biopsy for biomarker discovery, therapy selection, and response monitoring
BM Diehl, P Lakkaraju, S Shukla, R Dayan, X Liu, J Werbin, J Lai, ...
Gene 5, 30ng, 2023
32023
Proper conditional analysis in the presence of missing data identified novel independently associated low frequency variants in nicotine dependence genes
B Jiang, S Chen, Y Jiang, M Liu, WG Iacono, JK Hewitt, JE Hokanson, ...
bioRxiv, 222695, 2017
32017
Accurate epigenomic estimates of circulating tumor fraction in large-scale clinical data
WWY Greenwald, Y He, S Chen, T Jiang, A Valouev, J Min, C Barbacioru, ...
Lung 276, 203, 2022
12022
The contribution of rare and low-frequency variants to colorectal cancer heritability
JR Huyghe, S Chen, HM Kang, T Harrison, SI Berndt, S Bézieau, ...
Cancer Research 77 (13_Supplement), 1304-1304, 2017
12017
Large scale whole genome sequencing with imputation into GWAS improves our understanding of the genetic architecture of colorectal cancer
J Huyghe, S Chen, HM Kang, TA Harrison, SI Berndt, S Bézieau, ...
Cancer Research 76 (14_Supplement), 5230-5230, 2016
12016
BRCA1 promoter methylation in sporadic breast cancer patients detected by liquid biopsy
J Yen, S Chen, C Jenkins, LM Drusbosky, B Overstreet, J Zhao, Y Fu, ...
chemotherapy 1 (2), 3, 2023
2023
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Articles 1–20