Federica Eduati
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A microfluidics platform for combinatorial drug screening on cancer biopsies
F Eduati, R Utharala, D Madhavan, UP Neumann, T Longerich, T Cramer, ...
Nature communications 9 (1), 2434, 2018
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933-940, 2015
Drug resistance mechanisms in colorectal cancer dissected with cell type–specific dynamic logic models
F Eduati, V Doldān-Martelli, B Klinger, T Cokelaer, A Sieber, F Kogera, ...
Cancer research 77 (12), 3364-3375, 2017
Exhaustively characterizing feasible logic models of a signaling network using answer set programming
C Guziolowski, S Videla, F Eduati, S Thiele, T Cokelaer, A Siegel, ...
Bioinformatics 29 (18), 2320-2326, 2013
Patient‐specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies
F Eduati, P Jaaks, J Wappler, T Cramer, CA Merten, MJ Garnett, ...
Molecular systems biology 16 (2), e8664, 2020
Multi-omics profiling of the tumor microenvironment: paving the way to precision immuno-oncology
F Finotello, F Eduati
Frontiers in Oncology 8, 430, 2018
Interpretable systems biomarkers predict response to immune-checkpoint inhibitors
Ķ Lapuente-Santana, M van Genderen, PAJ Hilbers, F Finotello, F Eduati
Patterns 2 (8), 2021
Integrating literature-constrained and data-driven inference of signalling networks
F Eduati, J De Las Rivas, B Di Camillo, G Toffolo, J Saez-Rodriguez
Bioinformatics 28 (18), 2311-2317, 2012
Learning Boolean logic models of signaling networks with ASP
S Videla, C Guziolowski, F Eduati, S Thiele, M Gebser, J Nicolas, ...
Theoretical Computer Science 599, 79-101, 2015
A rule-based model of insulin signalling pathway
B Di Camillo, A Carlon, F Eduati, GM Toffolo
BMC systems biology 10, 1-13, 2016
Logic modeling in quantitative systems pharmacology
P Traynard, L Tobalina, F Eduati, L Calzone, J Saez‐Rodriguez
CPT: pharmacometrics & systems pharmacology 6 (8), 499-511, 2017
Revisiting the training of logic models of protein signaling networks with ASP
S Videla, C Guziolowski, F Eduati, S Thiele, N Grabe, J Saez-Rodriguez, ...
Computational methods in systems biology: 10th international conference …, 2012
DREAMTools: a Python package for scoring collaborative challenges
T Cokelaer, M Bansal, C Bare, E Bilal, BM Bot, EC Neto, F Eduati, ...
F1000Research 4, 2015
Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells
B Di Camillo, F Eduati, SK Nair, A Avogaro, GM Toffolo
BMC cell biology 15, 1-9, 2014
A Boolean approach to linear prediction for signaling network modeling
F Eduati, A Corradin, B Di Camillo, G Toffolo
PloS one 5 (9), e12789, 2010
Liquid biopsy-based decision support algorithms for diagnosis and subtyping of lung cancer
E Visser, SAAM Genet, RPPA de Kock, BEEM van den Borne, ...
Lung Cancer 178, 28-36, 2023
Towards systems biomarkers of response to immune checkpoint blockers
Ķ Lapuente-Santana, F Eduati
Frontiers in Oncology 10, 1027, 2020
Correction of the NSE concentration in hemolyzed serum samples improves its diagnostic accuracy in small-cell lung cancer
SAAM Genet, E Visser, BEEM van den Borne, M Youssef-El Soud, ...
Oncotarget 11 (27), 2660, 2020
Dynamic modeling of miRNA-mediated feed-forward loops
F Eduati, B Di Camillo, M Karbiener, M Scheideler, D Corā, M Caselle, ...
Journal of computational biology 19 (2), 188-199, 2012
Up-front mutation detection in circulating tumor DNA by droplet digital PCR has added diagnostic value in lung cancer
E Visser, R de Kock, S Genet, B van den Borne, M Youssef-El Soud, ...
Translational Oncology 27, 101589, 2023
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