| Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases MR Corces, A Shcherbina, S Kundu, MJ Gloudemans, L Frésard, ... Nature genetics 52 (11), 1158-1168, 2020 | 239 | 2020 |
| RANGER-DTL 2.0: rigorous reconstruction of gene-family evolution by duplication, transfer and loss MS Bansal, M Kellis, M Kordi, S Kundu Bioinformatics 34 (18), 3214-3216, 2018 | 73 | 2018 |
| Single-nucleus chromatin accessibility profiling highlights regulatory mechanisms of coronary artery disease risk AW Turner, SS Hu, JV Mosquera, WF Ma, CJ Hodonsky, D Wong, ... Nature Genetics 54 (6), 804-816, 2022 | 61* | 2022 |
| SaGePhy: an improved phylogenetic simulation framework for gene and subgene evolution S Kundu, MS Bansal Bioinformatics 35 (18), 3496-3498, 2019 | 26 | 2019 |
| Assessing the accuracy of phylogenetic rooting methods on prokaryotic gene families T Wade, LT Rangel, S Kundu, GP Fournier, MS Bansal PloS one 15 (5), e0232950, 2020 | 23 | 2020 |
| Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease M Ameen, L Sundaram, M Shen, A Banerjee, S Kundu, S Nair, ... Cell 185 (26), 4937-4953. e23, 2022 | 19 | 2022 |
| On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation S Kundu, MS Bansal BMC bioinformatics 19, 21-31, 2018 | 17 | 2018 |
| On inferring additive and replacing horizontal gene transfers through phylogenetic reconciliation M Kordi, S Kundu, MS Bansal Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019 | 9 | 2019 |
| The Impact of Genomic Variation on Function (IGVF) Consortium IGVF Consortium ArXiv, 2023 | 4 | 2023 |
| Transcriptomics and chromatin accessibility in multiple African population samples MK DeGorter, PC Goddard, E Karakoc, S Kundu, SM Yan, D Nachun, ... bioRxiv, 2023 | 1 | 2023 |
| Direct induction of human neurons from fibroblasts carrying the neuropsychiatric 22q11. 2 microdeletion reveals transcriptome-and epigenome-wide alterations C Purmann, CE Ang, K Tanabe, Y Zhang, S Kundu, T Danko, S Ma, ... bioRxiv, 2021.10. 14.464344, 2021 | | 2021 |
| An Improved Probabilistic Simulation Framework for Gene Family Evolution S Kundu | | 2018 |
| Assessing the Impact of Uncertain Gene Tree Rooting on Phylogenetic Reconciliation Using a Simulation Framework S Kundu, MS Bansal Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | | 2017 |
| Automatic Detection of Complex Structural Genome Variation Across Human Populations and in Brains of Individuals with Psychiatric Disorders B Zhou, JG Arthur, H Guo, T Kim, Y Huang, R Pattni, S Kundu, JXJ Luo, ... | | |
