Rumen Andonov

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Yanev NicolaVerified email at math.bas.bg
Sanjay RajopadhyeColorado State UniversityVerified email at colostate.edu
Dominique LavenierIRISAVerified email at irisa.fr
Hristo DjidjevScientist, Los Alamos National LaboratoryVerified email at lanl.gov
vincent poirriezProfessor of Computer Science, Université de Valenciennes et du Hainaut CambrésisVerified email at univ-valenciennes.fr
Noël Malod-DogninBarcelona Supercomputing Center - Department of Life SciencesVerified email at bsc.es
Inken WohlersResearch Center Borstel, Leibniz Lung CenterVerified email at fz-borstel.de
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Patrice QuintonProfesseur émérite en informatique, ENS Rennes, IRISAVerified email at ens-rennes.fr
Mathilde LE BOUDIC-JAMINPhD (computer science and biology); IRISA, University of Rennes 1Verified email at mlbj.fr
Yves Le LoirINRAVerified email at inra.fr
Nouri BEN ZAKOURWestmead Institute for Medical ResearchVerified email at sydney.edu.au
Vassil AlexandrovHartee Centre - STFC, UKVerified email at stfc.ac.uk
Dr. Frédéric RaimbaultAssociate Professor, University of South Brittany, F-56017 Vannes, FranceVerified email at irisa.fr
fred gruauAssistant Professor, 'informatique, université Paris SacalyVerified email at lisn.fr
Lazaros MavridisAbbvie - Director, Data ScienceVerified email at abbvie.com
David RitchieSenior Researcher at INRIA Nancy Verified email at inria.fr
Pritish KamathGoogle ResearchVerified email at google.com
Antonio MucherinoIRISA, University of Rennes 1Verified email at irisa.fr
Doran WildeElectrical and Computer Engineering, Brigham Young University

Rumen Andonov

professeur d'informatique, Université de Rennes 1

Verified email at irisa.fr - Homepage

Combinatorial Optimization Bioinformatics


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Unbounded knapsack problem: Dynamic programming revisited R Andonov, V Poirriez, S Rajopadhye European Journal of Operational Research 123 (2), 394-407, 2000	229	2000
Unbounded knapsack problem: Dynamic programming revisited R Andonov, V Poirriez, S Rajopadhye European Journal of Operational Research 123 (2), 394-407, 2000	212	2000
A dynamic programming based reduction procedure for the multidimensional 0–1 knapsack problem S Balev, N Yanev, A Fréville, R Andonov European journal of operational research 186 (1), 63-76, 2008	98	2008
Optimal orthogonal tiling of 2-D iterations R Andonov, S Rajopadhye Journal of Parallel and Distributed computing 45 (2), 159-165, 1997	81	1997
Optimal semi-oblique tiling R Andonov, S Balev, S Rajopadhye, N Yanev Proceedings of the thirteenth annual ACM symposium on Parallel algorithms …, 2001	76	2001
A hybrid algorithm for the unbounded knapsack problem V Poirriez, N Yanev, R Andonov Discrete Optimization 6 (1), 110-124, 2009	71	2009
Maximum contact map overlap revisited R Andonov, N Malod-Dognin, N Yanev Journal of Computational Biology 18 (1), 27-41, 2011	64	2011
Protein threading: From mathematical models to parallel implementations R Andonov, S Balev, N Yanev INFORMS Journal on Computing 16 (4), 393-405, 2004	41	2004
Maximum cliques in protein structure comparison N Malod-Dognin, R Andonov, N Yanev Experimental Algorithms: 9th International Symposium, SEA 2010, Ischia …, 2010	39	2010
Efficient multi-GPU computation of all-pairs shortest paths H Djidjev, S Thulasidasan, G Chapuis, R Andonov, D Lavenier 2014 IEEE 28th International Parallel and Distributed Processing Symposium …, 2014	38	2014
Dynamic programming parallel implementations for the knapsack problem R Andonov, F Raimbault, P Quinton INRIA, 1993	36	1993
All-Pairs Shortest Path algorithms for planar graph for GPU-accelerated clusters H Djidjev, G Chapuis, R Andonov, S Thulasidasan, D Lavenier Journal of Parallel and Distributed Computing 85, 91-103, 2015	32	2015
GenoFrag: software to design primers optimized for whole genome scanning by long‐range PCR amplification N Ben Zakour, M Gautier, R Andonov, D Lavenier, MF Cochet, P Veber, ... Nucleic Acids Research 32 (1), 17-24, 2004	32	2004
An efficient lagrangian relaxation for the contact map overlap problem R Andonov, N Yanev, N Malod-Dognin Algorithms in Bioinformatics: 8th International Workshop, WABI 2008 …, 2008	31	2008
Optimal orthogonal tiling R Andonov, S Rajopadhye, N Yanev Euro-Par 98, 480-490, 1998	31	1998
Two-dimensional orthogonal tiling: from theory to practice R Andonov, H Bourzoufi, S Rajopadhye Proceedings of 3rd International Conference on High Performance Computing …, 1996	29	1996
A sparse knapsack algo-tech-cuit and its synthesis R Andonov, S Rajopadhye Proceedings of IEEE International Conference on Application Specific Array …, 1994	27	1994
CSA: comprehensive comparison of pairwise protein structure alignments I Wohlers, N Malod-Dognin, R Andonov, GW Klau Nucleic acids research 40 (W1), W303-W309, 2012	26	2012
Simple, accurate, analytical time modeling and optimal tile size selection for GPGPU stencils N Prajapati, W Ranasinghe, S Rajopadhye, R Andonov, H Djidjev, ... Proceedings of the 22Nd ACM SIGPLAN Symposium on Principles and Practice of …, 2017	25	2017
DALIX: optimal DALI protein structure alignment I Wohlers, R Andonov, GW Klau IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (1), 26-36, 2012	24	2012

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