Jose Maria Carazo
Jose Maria Carazo
Professor, Spanish National Center for Biotechnology, CNB-CSIC
Verified email at
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DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
R Sanchez-Garcia, J Gomez-Blanco, A Cuervo, JM Carazo, COS Sorzano, ...
Communications biology 4 (1), 874, 2021
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
P Carmona-Saez, M Chagoyen, F Tirado, JM Carazo, A Pascual-Montano
Genome biology 8, 1-8, 2007
DeepRes: a new deep-learning-and aspect-based local resolution method for electron-microscopy maps
E Ramírez-Aportela, J Mota, P Conesa, JM Carazo, COS Sorzano
IUCrJ 6 (6), 1054-1063, 2019
Image processing tools for the validation of CryoEM maps
COS Sorzano, JL Vilas, E Ramírez-Aportela, J Krieger, D Del Hoyo, ...
Faraday Discussions 240, 210-227, 2022
XMIPP: a new generation of an open-source image processing package for electron microscopy
COS Sorzano, R Marabini, J Velázquez-Muriel, JR Bilbao-Castro, ...
Journal of structural biology 148 (2), 194-204, 2004
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
JM De la Rosa-Trevin, A Quintana, L Del Cano, A Zaldívar, I Foche, ...
Journal of structural biology 195 (1), 93-99, 2016
Nonsmooth nonnegative matrix factorization (nsNMF)
A Pascual-Montano, JM Carazo, K Kochi, D Lehmann, ...
IEEE transactions on pattern analysis and machine intelligence 28 (3), 403-415, 2006
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information
R Nogales-Cadenas, P Carmona-Saez, M Vazquez, C Vicente, X Yang, ...
Nucleic acids research 37 (suppl_2), W317-W322, 2009
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
SHW Scheres, H Gao, M Valle, GT Herman, PPB Eggermont, J Frank, ...
Nature methods 4 (1), 27-29, 2007
Consistent and elastic registration of histological sections using vector-spline regularization
I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ...
Computer Vision Approaches to Medical Image Analysis: Second International …, 2006
Image processing for electron microscopy single-particle analysis using XMIPP
SHW Scheres, R Núñez-Ramírez, COS Sorzano, JM Carazo, R Marabini
Nature protocols 3 (6), 977-990, 2008
Serial analysis of the gut and respiratory microbiome in cystic fibrosis in infancy: interaction between intestinal and respiratory tracts and impact of nutritional exposures
JC Madan, DC Koestler, BA Stanton, L Davidson, LA Moulton, ...
MBio 3 (4), 10.1128/mbio. 00251-12, 2012
Xmipp 3.0: an improved software suite for image processing in electron microscopy
JM De la Rosa-Trevín, J Otón, R Marabini, A Zaldívar, J Vargas, ...
Journal of structural biology 184 (2), 321-328, 2013
Maximum-likelihood multi-reference refinement for electron microscopy images
SHW Scheres, M Valle, R Nunez, COS Sorzano, R Marabini, GT Herman, ...
Journal of molecular biology 348 (1), 139-149, 2005
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree
J Dopazo, JM Carazo
Journal of molecular evolution 44 (2), 226-233, 1997
Biclustering of gene expression data by non-smooth non-negative matrix factorization
P Carmona-Saez, RD Pascual-Marqui, F Tirado, JM Carazo, ...
BMC bioinformatics 7, 1-18, 2006
Xmipp: an image processing package for electron microscopy
R Marabini, IM Masegosa, MC San Martın, S Marco, JJ Fernandez, ...
Journal of structural biology 116 (1), 237-240, 1996
A clustering approach to multireference alignment of single-particle projections in electron microscopy
COS Sorzano, JR Bilbao-Castro, Y Shkolnisky, M Alcorlo, R Melero, ...
Journal of structural biology 171 (2), 197-206, 2010
MonoRes: automatic and accurate estimation of local resolution for electron microscopy maps
JL Vilas, J Gómez-Blanco, P Conesa, R Melero, JM de la Rosa-Trevín, ...
Structure 26 (2), 337-344. e4, 2018
Quaternary structures of tumor suppressor p53 and a specific p53–DNA complex
H Tidow, R Melero, E Mylonas, SMV Freund, JG Grossmann, JM Carazo, ...
Proceedings of the National Academy of Sciences 104 (30), 12324-12329, 2007
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