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Bilbao-Castro, J. R.
Bilbao-Castro, J. R.
Supercomputing-algorithms group, University of Almería
Verified email at ual.es
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Year
Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae
L Carretero-Paulet, A Galstyan, I Roig-Villanova, JF Martinez-Garcia, ...
Plant physiology 153 (3), 1398-1412, 2010
5842010
XMIPP: a new generation of an open-source image processing package for electron microscopy
COS Sorzano, R Marabini, J Velázquez-Muriel, JR Bilbao-Castro, ...
Journal of structural biology 148 (2), 194-204, 2004
5422004
A clustering approach to multireference alignment of single-particle projections in electron microscopy
COS Sorzano, JR Bilbao-Castro, Y Shkolnisky, M Alcorlo, R Melero, ...
Journal of structural biology 171 (2), 197-206, 2010
2302010
Marker-free image registration of electron tomography tilt-series
COS Sorzano, C Messaoudi, M Eibauer, JR Bilbao-Castro, R Hegerl, ...
BMC bioinformatics 10, 1-11, 2009
1192009
Iterative elastic 3D-to-2D alignment method using normal modes for studying structural dynamics of large macromolecular complexes
Q Jin, COS Sorzano, JM de La Rosa-Trevín, JR Bilbao-Castro, ...
Structure 22 (3), 496-506, 2014
1052014
Automatic particle selection from electron micrographs using machine learning techniques
COS Sorzano, E Recarte, M Alcorlo, JR Bilbao-Castro, C San-Martín, ...
Journal of structural biology 167 (3), 252-260, 2009
792009
A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function
V Abrishami, JR Bilbao-Castro, J Vargas, R Marabini, JM Carazo, ...
Ultramicroscopy 157, 79-87, 2015
292015
Eco-evolutionary spatial dynamics: rapid evolution and isolation explain food web persistence
J Moya-Laraño, JR Bilbao-Castro, G Barrionuevo, D Ruiz-Lupión, ...
Advances in ecological research 50, 75-143, 2014
292014
Parallelization of reconstruction algorithms in three-dimensional electron microscopy
JR Bilbao-Castro, JM Carazo, I Garcia, JJ Fernández
Applied mathematical modelling 30 (8), 688-701, 2006
242006
Exploiting desktop supercomputing for three-dimensional electron microscopy reconstructions using ART with blobs
JR Bilbao-Castro, R Marabini, COS Sorzano, I García, JM Carazo, ...
Journal of Structural Biology 165 (1), 19-26, 2009
232009
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy
JR Bilbao-Castro, JM Carazo, I García, JJ Fernandez
Proceedings 2003 International Conference on Image Processing (Cat. No …, 2003
182003
Phan3D: design of biological phantoms in 3D electron microscopy
JR Bilbao-Castro, COS Sorzano, I García, JJ Fernández
Bioinformatics 20 (17), 3286-3288, 2004
152004
Parameter optimization in 3D reconstruction on a large scale grid
JR Bilbao-Castro, A Merino, I García, JM Carazo, JJ Fernández
Parallel Computing 33 (4-5), 250-263, 2007
142007
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography
JR Bilbao-Castro, COS Sorzano, I García, JJ Fernández
Bioinformatics 26 (21), 2786-2787, 2010
122010
On the suitability of biological structure determination by electron microscopy to grid computing
JJ Fernandez, JR Bilbao-Castro, R Marabini, JM Carazo, I Garcia
New Generation Computing 23, 101-112, 2005
112005
Performance of Parallel 3 D Iterative Reconstruction Algorithms
JR Bilbao-Castro, JM Carazo
WSEAS Transactions on Biology and Biomedicine 1 (1), 112-119, 2004
112004
Image processing in electron tomography
J Fernandez, J Agulleiro, J Bilbao-Castro, A Martínez, I García, ...
Microscopy: science, technology, applications and education, 19-28, 2010
92010
Weaver: A multiagent, spatial-explicit and high-performance framework to study complex ecological networks
JR Bilbao-Castro, G Barrionuevo, D Ruiz-Lupión, LG Casado, ...
Highlights of Practical Applications of Agents, Multi-Agent Systems, and …, 2015
62015
Parallelization and comparison of 3d iterative reconstruction algorithms
JR Bilbao-Castro, JM Carazo, JJ Fernandez, I García
12th Euromicro Conference on Parallel, Distributed and Network-Based …, 2004
62004
EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography
JR Bilbao-Castro, I García, JJ Fernández
Bioinformatics 23 (24), 3391-3393, 2007
52007
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Articles 1–20