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James P. Balhoff
James P. Balhoff
Renaissance Computing Institute (RENCI), University of North Carolina at Chapel Hill
Verified email at renci.org
Title
Cited by
Cited by
Year
The gene ontology resource: 20 years and still GOing strong
Gene Ontology Consortium
Nucleic acids research 47 (D1), D330-D338, 2019
34822019
The Gene Ontology resource: enriching a GOld mine
Nucleic acids research 49 (D1), D325-D334, 2021
24912021
Expansion of the Gene Ontology knowledgebase and resources
GO Consortium
Nucleic Acids Research 45 (D1), D331-D338, 2017
1740*2017
The evolution of transcriptional regulation in eukaryotes
GA Wray, MW Hahn, E Abouheif, JP Balhoff, M Pizer, MV Rockman, ...
Molecular biology and evolution 20 (9), 1377-1419, 2003
13962003
Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources
S Köhler, L Carmody, N Vasilevsky, JOB Jacobsen, D Danis, JP Gourdine, ...
Nucleic acids research 47 (D1), D1018-D1027, 2019
6662019
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
CJ Mungall, JA McMurry, S Köhler, JP Balhoff, C Borromeo, M Brush, ...
Nucleic acids research 45 (D1), D712-D722, 2017
2992017
The gene ontology knowledgebase in 2023
SA Aleksander, J Balhoff, S Carbon, JM Cherry, HJ Drabkin, D Ebert, ...
Genetics 224 (1), iyad031, 2023
2602023
Finding our way through phenotypes
AR Deans, SE Lewis, E Huala, SS Anzaldo, M Ashburner, JP Balhoff, ...
PLoS biology 13 (1), e1002033, 2015
2292015
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ...
Nucleic acids research 48 (D1), D704-D715, 2020
1992020
Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar’s lemurs
JE Horvath, DW Weisrock, SL Embry, I Fiorentino, JP Balhoff, P Kappeler, ...
Genome Research 18 (3), 489-499, 2008
1932008
Time to change how we describe biodiversity
AR Deans, MJ Yoder, JP Balhoff
Trends in ecology & evolution 27 (2), 78-84, 2012
1692012
ROBOT: a tool for automating ontology workflows
RC Jackson, JP Balhoff, E Douglass, NL Harris, CJ Mungall, JA Overton
BMC bioinformatics 20, 1-10, 2019
1452019
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
MA Haendel, JP Balhoff, FB Bastian, DC Blackburn, JA Blake, Y Bradford, ...
Journal of biomedical semantics 5, 1-13, 2014
1392014
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
R Jackson, N Matentzoglu, JA Overton, R Vita, JP Balhoff, PL Buttigieg, ...
Database 2021, baab069, 2021
1252021
The gene ontology knowledgebase in 2023
C Gene Ontology, SA Aleksander, J Balhoff, S Carbon, JM Cherry, ...
Genetics 224 (1), iyad031, 2023
1122023
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ...
Systematic biology 61 (4), 675-689, 2012
1052012
Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature
WM Dahdul, JP Balhoff, J Engeman, T Grande, EJ Hilton, C Kothari, ...
PLoS One 5 (5), e10708, 2010
1042010
The teleost anatomy ontology: anatomical representation for the genomics age
WM Dahdul, JG Lundberg, PE Midford, JP Balhoff, H Lapp, TJ Vision, ...
Systematic biology 59 (4), 369-383, 2010
1022010
Phenex: ontological annotation of phenotypic diversity
JP Balhoff, WM Dahdul, CR Kothari, H Lapp, JG Lundberg, P Mabee, ...
PLoS One 5 (5), e10500, 2010
1012010
KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response
JT Reese, D Unni, TJ Callahan, L Cappelletti, V Ravanmehr, S Carbon, ...
Patterns 2 (1), 2021
912021
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Articles 1–20