Bulent Arman Aksoy

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Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Ugur DogrusozProfessor of Computer Engineering, Bilkent University, Ankara, TurkeyVerified email at cs.bilkent.edu.tr
Ethan CeramiDirector, Knowledge Systems Group, Dana-Farber Cancer InstituteVerified email at jimmy.harvard.edu
Nikolaus SchultzCenter for Molecular Oncology, Memorial Sloan Kettering Cancer CenterVerified email at cbio.mskcc.org
JianJiong GaoCaris Life SciencesVerified email at carisls.com
Anders Jacobsen SkanderupGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
Jeff HammerbacherPrincipal Investigator at Hammer LabVerified email at hammerlab.org
Gideon DresdnerETH ZürichVerified email at duck.com
Emek DemirOHSUVerified email at ohsu.edu
Özgün BaburAssistant Professor at University of Massachusetts BostonVerified email at umb.edu
Giovanni CirielloDepartment of Computational Biology, University of Lausanne (UNIL)Verified email at unil.ch
Augustin LunaResearch Associate | Dept. of Data Science, Dana-Farber Cancer Institute, Harvard Medical SchoolVerified email at mail.nih.gov
Martin L MillerSenior Director, AstraZenecaVerified email at astrazeneca.com
Ed ReznikMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
William LeeMemorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Anil KorkutMD Anderson Cancer CenterVerified email at mdanderson.org
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Nicholas Paul GauthierDana Farber Cancer InstituteVerified email at jimmy.harvard.edu

Bulent Arman Aksoy

Obsidian Therapeutics

Verified email at aksoy.org - Homepage

Computational Biology Genetics Bioinformatics Molecular Biology Immunology


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The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ... Cancer Discovery 2 (5), 401-404, 2012	13389	2012
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal J Gao, BA Aksoy, U Dogrusoz, G Dresdner, B Gross, SO Sumer, Y Sun, ... Science Signaling, scisignal. 2004088v1, 2013	12547	2013
Comprehensive molecular portraits of human breast tumours Brigham & Women’s Hospital & Harvard Medical School Chin Lynda 9 11 Park ... Nature 490 (7418), 61-70, 2012	10497	2012
Comprehensive molecular characterization of human colon and rectal cancer DM Muzny, MN Bainbridge, K Chang, HH Dinh, JA Drummond, G Fowler, ... Nature 487, 330-337, 2012	7010	2012
The somatic genomic landscape of glioblastoma CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ... Cell 155 (2), 462-477, 2013	4541	2013
Integrated genomic characterization of endometrial carcinoma DA Levine, ... Nature 497 (7447), 67-73, 2013	4361	2013
Comprehensive genomic characterization of squamous cell lung cancers. PS Hammerman, DN Hayes, MD Wilkerson, N Schultz, R Bose, A Chu, ... Nature 489 (7417), 519-525, 2012	3462*	2012
Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas Cancer Genome Atlas Research Network New England Journal of Medicine 372 (26), 2481-2498, 2015	2681	2015
Comprehensive molecular characterization of urothelial bladder carcinoma Cancer Genome Atlas Research Network Nature 507 (7492), 315, 2014	2471	2014
Genomic classification of cutaneous melanoma R Akbani, KC Akdemir, BA Aksoy, M Albert, A Ally, SB Amin, H Arachchi, ... Cell 161 (7), 1681-1696, 2015	2469	2015
Integrated genomic characterization of papillary thyroid carcinoma N Agrawal, R Akbani, BA Aksoy, A Ally, H Arachchi, SL Asa, JT Auman, ... Cell 159 (3), 676-690, 2014	2274	2014
Emerging landscape of oncogenic signatures across human cancers G Ciriello, ML Miller, BA Aksoy, Y Senbabaoglu, N Schultz, C Sander Nature genetics 45 (10), 1127-1133, 2013	1430	2013
An integrated metabolic atlas of clear cell renal cell carcinoma AA Hakimi, ED Reznik, CH Lee, CJ Creighton, AR Brannon, A Luna, ... Cancer cell 29 (1), 104-116, 2016	569	2016
Characterization of HPV and host genome interactions in primary head and neck cancers M Parfenov, CS Pedamallu, N Gehlenborg, SS Freeman, L Danilova, ... Proceedings of the National Academy of Sciences 111 (43), 15544-15549, 2014	386	2014
Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: an exploratory multi-omic analysis A Snyder, T Nathanson, SA Funt, A Ahuja, J Buros Novik, MD Hellmann, ... PLoS medicine 14 (5), e1002309, 2017	262	2017
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ... Nucleic acids research 48 (D1), D489-D497, 2020	223	2020
Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations Ö Babur, M Gönen, BA Aksoy, N Schultz, G Ciriello, C Sander, E Demir Genome biology 16, 1-10, 2015	164	2015
Genome-wide inference of natural selection on human transcription factor binding sites L Arbiza, I Gronau, BA Aksoy, MJ Hubisz, B Gulko, A Keinan, A Siepel Nature genetics 45 (7), 723-729, 2013	141	2013
A landscape of metabolic variation across tumor types E Reznik, A Luna, BA Aksoy, EM Liu, K La, I Ostrovnaya, CJ Creighton, ... Cell systems 6 (3), 301-313. e3, 2018	124	2018
T cells genetically engineered to overcome death signaling enhance adoptive cancer immunotherapy TN Yamamoto, PH Lee, SK Vodnala, D Gurusamy, RJ Kishton, Z Yu, ... The Journal of clinical investigation 129 (4), 1551-1565, 2019	120	2019

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