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Harald Barsnes
Harald Barsnes
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Year
PeptideShaker enables reanalysis of MS-derived proteomics data sets
M Vaudel, JM Burkhart, RP Zahedi, E Oveland, FS Berven, A Sickmann, ...
Nature biotechnology 33 (1), 22-24, 2015
5562015
SearchGUI: An open‐source graphical user interface for simultaneous OMSSA and X! Tandem searches
M Vaudel, H Barsnes, FS Berven, A Sickmann, L Martens
Proteomics 11 (5), 996-999, 2011
4112011
The proteomics identifications database: 2010 update
JA Vizcaíno, R Coˆte, F Reisinger, H Barsnes, JM Foster, J Rameseder, ...
Nucleic acids research 38 (suppl_1), D736-D742, 2010
2492010
BioContainers: an open-source and community-driven framework for software standardization
F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ...
Bioinformatics 33 (16), 2580-2582, 2017
2382017
PRIDE Converter: making proteomics data-sharing easy
H Barsnes, JA Vizcaino, I Eidhammer, L Martens
Nature biotechnology 27 (7), 598-599, 2009
1822009
SearchGUI: a highly adaptable common interface for proteomics search and de novo engines
H Barsnes, M Vaudel
Journal of proteome research 17 (7), 2552-2555, 2018
1772018
ThermoRawFileParser: modular, scalable, and cross-platform RAW file conversion
N Hulstaert, J Shofstahl, T Sachsenberg, M Walzer, H Barsnes, L Martens, ...
Journal of proteome research 19 (1), 537-542, 2019
1482019
In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR)
A Guldbrandsen, H Vethe, Y Farag, E Oveland, H Garberg, M Berle, ...
Molecular & cellular proteomics 13 (11), 3152-3163, 2014
1442014
Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows
K Verheggen, H Ræder, FS Berven, L Martens, H Barsnes, M Vaudel
Mass spectrometry reviews 39 (3), 292-306, 2020
1342020
The ontology lookup service: bigger and better
R Cï¿ ½tï¿ ½, F Reisinger, L Martens, H Barsnes, JA Vizcaino, ...
Nucleic acids research 38 (suppl_2), W155-W160, 2010
1312010
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
1102012
compomics-utilities: an open-source Java library for computational proteomics
H Barsnes, M Vaudel, N Colaert, K Helsens, A Sickmann, FS Berven, ...
BMC bioinformatics 12, 1-6, 2011
1072011
IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT
MØ Arntzen, CJ Koehler, H Barsnes, FS Berven, A Treumann, B Thiede
Journal of proteome research 10 (2), 913-920, 2011
962011
Exploring the potential of public proteomics data
M Vaudel, K Verheggen, A Csordas, H Ræder, FS Berven, L Martens, ...
Proteomics 16 (2), 214-225, 2016
942016
ms_lims, a simple yet powerful open source laboratory information management system for MS‐driven proteomics
K Helsens, N Colaert, H Barsnes, T Muth, K Flikka, A Staes, E Timmerman, ...
Proteomics 10 (6), 1261-1264, 2010
922010
DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra
T Muth, L Weilnböck, E Rapp, CG Huber, L Martens, M Vaudel, ...
Journal of proteome research 13 (2), 1143-1146, 2014
822014
Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM
AC Kroksveen, E Aasebø, H Vethe, V Van Pesch, D Franciotta, ...
Journal of proteomics 78, 312-325, 2013
732013
Machine learning applications in proteomics research: How the past can boost the future
P Kelchtermans, W Bittremieux, K De Grave, S Degroeve, J Ramon, ...
Proteomics 14 (4-5), 353-366, 2014
682014
XTandem Parser: an open‐source library to parse and analyse X! Tandem MS/MS search results
T Muth, M Vaudel, H Barsnes, L Martens, A Sickmann
Proteomics 10 (7), 1522-1524, 2010
632010
The mzIdentML data standard version 1.2, supporting advances in proteome informatics
JA Vizcaíno, G Mayer, S Perkins, H Barsnes, M Vaudel, Y Perez-Riverol, ...
Molecular & cellular proteomics 16 (7), 1275-1285, 2017
592017
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