Qingyu Chen

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Zhiyong LuSenior Investigator, NLM; Adjunct Professor of CS, UIUCVerified email at nih.gov
Tiarnan D. L. KeenanStaff Clinician, National Eye Institute, National Institutes of HealthVerified email at nih.gov
Emily ChewNational Eye Institute/National Institutes of HealthVerified email at nei.nih.gov
Yifan PengAssociate Professor at Weill Cornell MedicineVerified email at med.cornell.edu
Wai T WongTiresias Biopharma ConsultingVerified email at Tiresiasbio.com
Qiao Jin, MDNational Institutes of HealthVerified email at nih.gov
Chih Hsuan WeiStaff Scientist, NCBI (National Center for Biotechnology Information) / NLM / NIHVerified email at ncbi.nlm.nih.gov
Yan HuUniversity of Texas Health Science Center at HoustonVerified email at uth.tmc.edu
W John WilburSenior scientist, National Center for Biotechnology InformationVerified email at ncbi.nlm.nih.gov
Karin VerspoorExecutive Dean, School of Computing Technologies, RMIT UniversityVerified email at rmit.edu.au
Robert LeamanStaff Scientist, NCBI/NLM/NIHVerified email at nih.gov
Jingcheng Du, Ph.D.School of Biomedical Informatics, UTHealthVerified email at uth.tmc.edu
Vipina K. KelothYale UniversityVerified email at yale.edu
Justin ZobelComputing and Information Systems, University of MelbourneVerified email at unimelb.edu.au
Xueqing PengYale UniversityVerified email at yale.edu
Po-Ting LaiNational Center for Biotechnology Information (NCBI)Verified email at ncbi.nlm.nih.gov
Sun KimAmazon Alexa AI; National Center for Biotechnology Information (NCBI)Verified email at amazon.com
Rezarta IslamajNational Center for Biotechnology Information, National Library of Medicine, National Institutes ofVerified email at nih.gov
Lana YeganovaScientist, National Institutes of HealthVerified email at mail.nih.gov
Hua XuRobert T. McCluskey Professor, Section of Biomedical Informatics and Data Science, Yale UniversityVerified email at yale.edu

Qingyu Chen

Biomedical Informatics & Data Science, Yale University; NCBI-NLM, National Institutes of Health

Verified email at yale.edu - Homepage

Text mining Machine learning Data curation BioNLP Medical Imaging Analysis


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
BioWordVec, improving biomedical word embeddings with subword information and MeSH Y Zhang, Q Chen, Z Yang, H Lin, Z Lu Scientific data 6 (1), 52, 2019	483	2019
Keep up with the latest coronavirus research Q Chen, A Allot, Z Lu Nature 579 (7798), 193-193, 2020	328	2020
DeepSeeNet: a deep learning model for automated classification of patient-based age-related macular degeneration severity from color fundus photographs Y Peng, S Dharssi, Q Chen, TD Keenan, E Agrón, WT Wong, EY Chew, ... Ophthalmology 126 (4), 565-575, 2019	322	2019
LitCovid: an open database of COVID-19 literature Q Chen, A Allot, Z Lu Nucleic acids research 49 (D1), D1534-D1540, 2021	311	2021
BioSentVec: creating sentence embeddings for biomedical texts Q Chen, Y Peng, Z Lu 2019 IEEE International Conference on Healthcare Informatics (ICHI), 1-5, 2019	221	2019
Opportunities and challenges for ChatGPT and large language models in biomedicine and health S Tian, Q Jin, L Yeganova, PT Lai, Q Zhu, X Chen, Y Yang, Q Chen, ... Briefings in Bioinformatics 25 (1), bbad493, 2024	168	2024
ML-Net: multi-label classification of biomedical texts with deep neural networks J Du, Q Chen, Y Peng, Y Xiang, C Tao, Z Lu Journal of the American Medical Informatics Association 26 (11), 1279-1285, 2019	167	2019
Improving large language models for clinical named entity recognition via prompt engineering Y Hu, Q Chen, J Du, X Peng, VK Keloth, X Zuo, Y Zhou, Z Li, X Jiang, Z Lu, ... Journal of the American Medical Informatics Association, ocad259, 2024	161*	2024
An empirical study of multi-task learning on BERT for biomedical text mining Y Peng, Q Chen, Z Lu arXiv preprint arXiv:2005.02799, 2020	112	2020
Genegpt: Augmenting large language models with domain tools for improved access to biomedical information Q Jin, Y Yang, Q Chen, Z Lu Bioinformatics 40 (2), btae075, 2024	101	2024
Artificial intelligence in action: addressing the COVID-19 pandemic with natural language processing Q Chen, R Leaman, A Allot, L Luo, CH Wei, S Yan, Z Lu Annual review of biomedical data science 4 (1), 313-339, 2021	75	2021
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval Q Jin, W Kim, Q Chen, DC Comeau, L Yeganova, WJ Wilbur, Z Lu Bioinformatics 39 (11), btad651, 2023	71	2023
A deep learning approach for automated detection of geographic atrophy from color fundus photographs TD Keenan, S Dharssi, Y Peng, Q Chen, E Agrón, WT Wong, Z Lu, ... Ophthalmology 126 (11), 1533-1540, 2019	70	2019
Predicting myocardial infarction through retinal scans and minimal personal information A Diaz-Pinto, N Ravikumar, R Attar, A Suinesiaputra, Y Zhao, E Levelt, ... Nature Machine Intelligence 4 (1), 55-61, 2022	66	2022
Biocuration: distilling data into knowledge International Society for Biocuration PLoS Biology 16 (4), e2002846, 2018	62	2018
Predicting risk of late age-related macular degeneration using deep learning Y Peng, TD Keenan, Q Chen, E Agrón, A Allot, WT Wong, EY Chew, Z Lu NPJ digital medicine 3 (1), 111, 2020	57	2020
A multi-task deep learning model for the classification of Age-related Macular Degeneration Q Chen, Y Peng, T Keenan, S Dharssi, E Agro, W Wai, E Chew, Z Lu AMIA Summits on Translational Science Proceedings 2019, 505, 2019	57	2019
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations Q Chen, J Du, Y Hu, VK Keloth, X Peng, K Raja, R Zhang, Z Lu, H Xu arXiv preprint arXiv:2305.16326, 2023	56*	2023
LitSense: making sense of biomedical literature at sentence level A Allot, Q Chen, S Kim, R Vera Alvarez, DC Comeau, WJ Wilbur, Z Lu Nucleic acids research 47 (W1), W594-W599, 2019	56	2019
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine R Islamaj Doğan, S Kim, A Chatr-Aryamontri, CH Wei, DC Comeau, ... Database 2019, bay147, 2019	55	2019

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