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Lisa M. Bramer
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Year
Dynamics of the human gut microbiome in inflammatory bowel disease
J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ...
Nature microbiology 2 (5), 1-7, 2017
11852017
Human gut microbiota from autism spectrum disorder promote behavioral symptoms in mice
G Sharon, NJ Cruz, DW Kang, MJ Gandal, B Wang, YM Kim, EM Zink, ...
Cell 177 (6), 1600-1618. e17, 2019
10242019
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
4962021
Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution
PD Piehowski, Y Zhu, LM Bramer, KG Stratton, R Zhao, DJ Orton, ...
Nature communications 11 (1), 1-12, 2020
1842020
21st century United States emissions mitigation could increase water stress more than the climate change it is mitigating
MI Hejazi, N Voisin, L Liu, LM Bramer, DC Fortin, JE Hathaway, M Huang, ...
Proceedings of the National Academy of Sciences 112 (34), 10635-10640, 2015
1692015
Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis
JF Challacombe, CN Hesse, LM Bramer, LA McCue, M Lipton, S Purvine, ...
BMC genomics 20, 1-27, 2019
1652019
Hypergraph models of biological networks to identify genes critical to pathogenic viral response
S Feng, E Heath, B Jefferson, C Joslyn, H Kvinge, HD Mitchell, ...
BMC bioinformatics 22 (1), 287, 2021
1112021
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
S Jain, L Pei, JM Spraggins, M Angelo, JP Carson, N Gehlenborg, F Ginty, ...
Nature cell biology 25 (8), 1089-1100, 2023
802023
Dispersal limitation and thermodynamic constraints govern spatial structure of permafrost microbial communities
EM Bottos, DW Kennedy, EB Romero, SJ Fansler, JM Brown, LM Bramer, ...
FEMS microbiology ecology 94 (8), fiy110, 2018
802018
A global lipid map defines a network essential for Zika virus replication
HC Leier, JB Weinstein, JE Kyle, JY Lee, LM Bramer, KG Stratton, ...
Nature communications 11 (1), 3652, 2020
692020
Carbon inputs from riparian vegetation limit oxidation of physically bound organic carbon via biochemical and thermodynamic processes
EB Graham, MM Tfaily, AR Crump, AE Goldman, LM Bramer, E Arntzen, ...
Journal of Geophysical Research: Biogeosciences 122 (12), 3188-3205, 2017
672017
A probe-enabled approach for the selective isolation and characterization of functionally active subpopulations in the gut microbiome
C Whidbey, NC Sadler, RN Nair, RF Volk, AJ DeLeon, LM Bramer, ...
Journal of the American Chemical Society 141 (1), 42-47, 2018
612018
Effects of ingested nanocellulose on intestinal microbiota and homeostasis in Wistar Han rats
S Khare, GM DeLoid, RM Molina, K Gokulan, SP Couvillion, ...
NanoImpact 18, 100216, 2020
602020
pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data
KG Stratton, BJM Webb-Robertson, LA McCue, B Stanfill, D Claborne, ...
Journal of proteome research 18 (3), 1418-1425, 2019
592019
Metaphenomic responses of a native prairie soil microbiome to moisture perturbations
T Roy Chowdhury, JY Lee, EM Bottos, CJ Brislawn, RA White III, ...
Msystems 4 (4), 10.1128/msystems. 00061-19, 2019
58*2019
Putting humpty dumpty back together again: what does protein quantification mean in bottom-up proteomics?
DL Plubell, L Käll, BJ Webb-Robertson, LM Bramer, A Ives, NL Kelleher, ...
Journal of proteome research 21 (4), 891-898, 2022
572022
Bayesian proteoform modeling improves protein quantification of global proteomic measurements
BJM Webb-Robertson, MM Matzke, S Datta, SH Payne, J Kang, ...
Molecular & cellular proteomics 13 (12), 3639-3646, 2014
542014
Missing data in multi-omics integration: Recent advances through artificial intelligence
JE Flores, DM Claborne, ZD Weller, BJM Webb-Robertson, KM Waters, ...
Frontiers in Artificial Intelligence 6, 1098308, 2023
532023
Temporal expression profiling of plasma proteins reveals oxidative stress in early stages of Type 1 Diabetes progression
CW Liu, L Bramer, BJ Webb-Robertson, K Waugh, MJ Rewers, Q Zhang
Journal of proteomics 172, 100-110, 2018
522018
Dynamics of the human gut microbiome in inflammatory bowel disease. Nat Microbiol 2: 17004
J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ...
502017
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Articles 1–20