Protein flexibility predictions using graph theory DJ Jacobs, AJ Rader, LA Kuhn, MF Thorpe Proteins: Structure, Function, and Bioinformatics 44 (2), 150-165, 2001 | 921 | 2001 |
Coarse-grained normal mode analysis in structural biology I Bahar, AJ Rader Current opinion in structural biology 15 (5), 586-592, 2005 | 820 | 2005 |
Protein unfolding: rigidity lost AJ Rader, BM Hespenheide, LA Kuhn, MF Thorpe Proceedings of the National Academy of Sciences 99 (6), 3540-3545, 2002 | 352 | 2002 |
Global ribosome motions revealed with elastic network model Y Wang, AJ Rader, I Bahar, RL Jernigan Journal of structural biology 147 (3), 302-314, 2004 | 340 | 2004 |
Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies C Chennubhotla, AJ Rader, LW Yang, I Bahar Physical biology 2 (4), S173, 2005 | 211 | 2005 |
Identification of core amino acids stabilizing rhodopsin AJ Rader, G Anderson, B Isin, HG Khorana, I Bahar, J Klein-Seetharaman Proceedings of the National Academy of Sciences 101 (19), 7246-7251, 2004 | 193 | 2004 |
Protein flexibility and dynamics using constraint theory MF Thorpe, M Lei, AJ Rader, DJ Jacobs, LA Kuhn Journal of Molecular Graphics and Modelling 19 (1), 60-69, 2001 | 163 | 2001 |
Identifying protein folding cores from the evolution of flexible regions during unfolding BM Hespenheide, AJ Rader, MF Thorpe, LA Kuhn Journal of Molecular Graphics and Modelling 21 (3), 195-207, 2002 | 162 | 2002 |
o GNM: online computation of structural dynamics using the Gaussian Network Model LW Yang, AJ Rader, X Liu, CJ Jursa, SC Chen, HA Karimi, I Bahar Nucleic acids research 34 (suppl_2), W24-W31, 2006 | 159 | 2006 |
Endoglucanases: insights into thermostability for biofuel applications RM Yennamalli, AJ Rader, AJ Kenny, JD Wolt, TZ Sen Biotechnology for biofuels 6, 1-9, 2013 | 151 | 2013 |
iGNM: a database of protein functional motions based on Gaussian Network Model LW Yang, X Liu, CJ Jursa, M Holliman, AJ Rader, HA Karimi, I Bahar Bioinformatics 21 (13), 2978-2987, 2005 | 147 | 2005 |
Maturation dynamics of bacteriophage HK97 capsid AJ Rader, DH Vlad, I Bahar Structure 13 (3), 413-421, 2005 | 108 | 2005 |
Folding core predictions from network models of proteins AJ Rader, I Bahar Polymer 45 (2), 659-668, 2004 | 83 | 2004 |
Thermostability in endoglucanases is fold-specific RM Yennamalli, AJ Rader, JD Wolt, TZ Sen BMC structural biology 11, 1-15, 2011 | 71 | 2011 |
The Gaussian network model: Theory and applications AJ Rader, C Chennubhotla, LW Yang, I Bahar Normal mode analysis, 65-88, 2005 | 69 | 2005 |
Generic rigidity of network glasses MF Thorpe, DJ Jacobs, NV Chubynsky, AJ Rader Rigidity theory and applications, 239-277, 2002 | 63 | 2002 |
Thermostability in rubredoxin and its relationship to mechanical rigidity AJ Rader Physical biology 7 (1), 016002, 2009 | 59 | 2009 |
Correlating allostery with rigidity AJ Rader, SM Brown Molecular bioSystems 7 (2), 464-471, 2011 | 53 | 2011 |
Predisposition of the dark state of rhodopsin to functional changes in structure B Isin, AJ Rader, HK Dhiman, J Klein‐Seetharaman, I Bahar PROTEINS: Structure, Function, and Bioinformatics 65 (4), 970-983, 2006 | 53 | 2006 |
Coarse-grained models: getting more with less AJ Rader Current opinion in pharmacology 10 (6), 753-759, 2010 | 39 | 2010 |