| Efficient step size selection for the tau-leaping simulation method Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 124 (4), 2006 | 838 | 2006 |
| The slow-scale stochastic simulation algorithm Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 122 (1), 2005 | 648 | 2005 |
| Efficient formulation of the stochastic simulation algorithm for chemically reacting systems Y Cao, H Li, L Petzold The journal of chemical physics 121 (9), 4059-4067, 2004 | 583 | 2004 |
| Adjoint sensitivity analysis for differential-algebraic equations: The adjoint DAE system and its numerical solution Y Cao, S Li, L Petzold, R Serban SIAM journal on scientific computing 24 (3), 1076-1089, 2003 | 579 | 2003 |
| Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method M Rathinam, LR Petzold, Y Cao, DT Gillespie The Journal of Chemical Physics 119 (24), 12784-12794, 2003 | 577 | 2003 |
| Epidemiological modeling of news and rumors on twitter F Jin, E Dougherty, P Saraf, Y Cao, N Ramakrishnan Proceedings of the 7th workshop on social network mining and analysis, 1-9, 2013 | 490 | 2013 |
| Avoiding negative populations in explicit Poisson tau-leaping Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 123 (5), 2005 | 365 | 2005 |
| Adaptive explicit-implicit tau-leaping method with automatic tau selection Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 126 (22), 2007 | 264 | 2007 |
| Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems Y Cao, D Gillespie, L Petzold Journal of Computational Physics 206 (2), 395-411, 2005 | 256 | 2005 |
| Sensitivity analysis of discrete stochastic systems R Gunawan, Y Cao, L Petzold, FJ Doyle Biophysical journal 88 (4), 2530-2540, 2005 | 232 | 2005 |
| Misinformation propagation in the age of twitter F Jin, W Wang, L Zhao, E Dougherty, Y Cao, CT Lu, N Ramakrishnan Computer 47 (12), 90-94, 2014 | 228 | 2014 |
| Algorithms and software for stochastic simulation of biochemical reacting systems H Li, Y Cao, LR Petzold, DT Gillespie Biotechnology progress 24 (1), 56-61, 2008 | 214 | 2008 |
| Adjoint sensitivity analysis for differential-algebraic equations: algorithms and software Y Cao, S Li, L Petzold Journal of computational and applied mathematics 149 (1), 171-191, 2002 | 163 | 2002 |
| Sensitivity analysis of differential-algebraic equations and partial differential equations L Petzold, S Li, Y Cao, R Serban Computers & chemical engineering 30 (10-12), 1553-1559, 2006 | 138 | 2006 |
| Consistency and stability of tau-leaping schemes for chemical reaction systems M Rathinam, LR Petzold, Y Cao, DT Gillespie Multiscale Modeling & Simulation 4 (3), 867-895, 2005 | 138 | 2005 |
| Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems Y Cao, L Petzold Journal of Computational Physics 212 (1), 6-24, 2006 | 131 | 2006 |
| Accelerated stochastic simulation of the stiff enzyme-substrate reaction Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 123 (14), 2005 | 109 | 2005 |
| The numerical stability of leaping methods for stochastic simulation of chemically reacting systems Y Cao, LR Petzold, M Rathinam, DT Gillespie Journal of Chemical Physics 121 (24), 12169-12178, 2004 | 104 | 2004 |
| A posteriori error estimation and global error control for ordinary differential equations by the adjoint method Y Cao, L Petzold SIAM Journal on Scientific Computing 26 (2), 359-374, 2004 | 89 | 2004 |
| Stochastic simulation of enzyme-catalyzed reactions with disparate timescales D Barik, MR Paul, WT Baumann, Y Cao, JJ Tyson Biophysical journal 95 (8), 3563-3574, 2008 | 70 | 2008 |
Linda PetzoldProfessor, University of California Santa BarbaraVerified email at cs.ucsb.edu
