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| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 328 | 2021 |
| Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1–based immunotherapy SY Lim, JH Lee, TN Gide, AM Menzies, A Guminski, MS Carlino, EJ Breen, ... Clinical Cancer Research 25 (5), 1557-1563, 2019 | 328 | 2019 |
| Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis T Lohoff, S Ghazanfar, A Missarova, N Koulena, N Pierson, JA Griffiths, ... Nature biotechnology 40 (1), 74-85, 2022 | 248* | 2022 |
| scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets Y Lin, S Ghazanfar, KYX Wang, JA Gagnon-Bartsch, KK Lo, X Su, ZG Han, ... Proceedings of the National Academy of Sciences 116 (20), 9775-9784, 2019 | 157 | 2019 |
| Toward a common coordinate framework for the human body JE Rood, T Stuart, S Ghazanfar, T Biancalani, E Fisher, A Butler, ... Cell 179 (7), 1455-1467, 2019 | 99 | 2019 |
| SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor D Righelli, LM Weber, HL Crowell, B Pardo, L Collado-Torres, ... Bioinformatics 38 (11), 3128-3131, 2022 | 92 | 2022 |
| Evaluating stably expressed genes in single cells Y Lin, S Ghazanfar, D Strbenac, A Wang, E Patrick, D Lin, T Speed, ... Gigascience, 2019 | 71* | 2019 |
| Investigating higher-order interactions in single-cell data with scHOT S Ghazanfar, Y Lin, X Su, DM Lin, E Patrick, ZG Han, JC Marioni, ... Nature methods 17 (8), 799-806, 2020 | 64 | 2020 |
| Diverse routes toward early somites in the mouse embryo C Guibentif, JA Griffiths, I Imaz-Rosshandler, S Ghazanfar, J Nichols, ... Developmental cell 56 (1), 141-153. e6, 2021 | 62 | 2021 |
| Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation M Barile, I Imaz-Rosshandler, I Inzani, S Ghazanfar, J Nichols, JC Marioni, ... Genome biology 22, 1-22, 2021 | 50 | 2021 |
| Stabilized mosaic single-cell data integration using unshared features S Ghazanfar, C Guibentif, JC Marioni Nature biotechnology 42 (2), 284-292, 2024 | 46* | 2024 |
| Clonal evolution in liver cancer at single-cell and single-variant resolution X Su, L Zhao, Y Shi, R Zhang, Q Long, S Bai, Q Luo, Y Lin, X Zou, ... Journal of hematology & oncology 14, 1-5, 2021 | 42 | 2021 |
| Systematic functional identification of cancer multi-drug resistance genes MT Lau, S Ghazanfar, A Parkin, A Chou, JR Rouaen, JB Littleboy, ... Genome biology 21, 1-12, 2020 | 36 | 2020 |
| KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis P Yang, E Patrick, SJ Humphrey, S Ghazanfar, DE James, R Jothi, ... Proteomics 16 (13), 1868-1871, 2016 | 36 | 2016 |
| Tuning of delta-protocadherin adhesion through combinatorial diversity AJ Bisogni, S Ghazanfar, EO Williams, HM Marsh, JYH Yang, DM Lin Elife 7, e41050, 2018 | 35 | 2018 |
| Integrated single cell data analysis reveals cell specific networks and novel coactivation markers S Ghazanfar, AJ Bisogni, JT Ormerod, DM Lin, JYH Yang BMC systems biology 10, 11-24, 2016 | 30 | 2016 |
| geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq A Missarova, J Jain, A Butler, S Ghazanfar, T Stuart, M Brusko, ... Genome biology 22, 1-22, 2021 | 29 | 2021 |
| Mutational and transcriptomic landscapes of a rare human prostate basal cell carcinoma X Su, Q Long, J Bo, Y Shi, LN Zhao, Y Lin, Q Luo, S Ghazanfar, C Zhang, ... The Prostate 80 (6), 508-517, 2020 | 21 | 2020 |
| BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data X Fu, Y Lin, DM Lin, D Mechtersheimer, C Wang, F Ameen, S Ghazanfar, ... Nature Communications 15 (1), 509, 2024 | 17 | 2024 |
Jean Yee Hwa YangUniversity of SydneyVerified email at sydney.edu.au
