Joachim Kopka
Joachim Kopka
Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
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Proposed minimum reporting standards for chemical analysis: chemical analysis working group (CAWG) metabolomics standards initiative (MSI)
LW Sumner, A Amberg, D Barrett, MH Beale, R Beger, CA Daykin, ...
Metabolomics 3, 211-221, 2007
Metabolite profiling for plant functional genomics
O Fiehn, J Kopka, P Dörmann, T Altmann, RN Trethewey, L Willmitzer
Nature biotechnology 18 (11), 1157-1161, 2000
Gas chromatography mass spectrometry–based metabolite profiling in plants
J Lisec, N Schauer, J Kopka, L Willmitzer, AR Fernie
Nature protocols 1 (1), 387-396, 2006
GMD@ CSB. DB: the Golm metabolome database
J Kopka, N Schauer, S Krueger, C Birkemeyer, B Usadel, E Bergmüller, ...
Bioinformatics 21 (8), 1635-1638, 2005
Simultaneous analysis of metabolites in potato tuber by gas chromatography–mass spectrometry
U Roessner, C Wagner, J Kopka, RN Trethewey, L Willmitzer
the plant journal 23 (1), 131-142, 2000
Exploring the temperature-stress metabolome of Arabidopsis
F Kaplan, J Kopka, DW Haskell, W Zhao, KC Schiller, N Gatzke, DY Sung, ...
Plant physiology 136 (4), 4159-4168, 2004
Potential of metabolomics as a functional genomics tool
RJ Bino, RD Hall, O Fiehn, J Kopka, K Saito, J Draper, BJ Nikolau, ...
Trends in plant science 9 (9), 418-425, 2004
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
N Schauer, Y Semel, U Roessner, A Gur, I Balbo, F Carrari, T Pleban, ...
Nature biotechnology 24 (4), 447-454, 2006
GC–MS libraries for the rapid identification of metabolites in complex biological samples
N Schauer, D Steinhauser, S Strelkov, D Schomburg, G Allison, T Moritz, ...
FEBS letters 579 (6), 1332-1337, 2005
Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry
O Fiehn, J Kopka, RN Trethewey, L Willmitzer
Analytical chemistry 72 (15), 3573-3580, 2000
Metabolomics of temperature stress
C Guy, F Kaplan, J Kopka, J Selbig, DK Hincha
Physiologia plantarum 132 (2), 220-235, 2008
TagFinder for the quantitative analysis of gas chromatography—mass spectrometry (GC-MS)-based metabolite profiling experiments
A Luedemann, K Strassburg, A Erban, J Kopka
Bioinformatics 24 (5), 732-737, 2008
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics
WB Dunn, A Erban, RJM Weber, DJ Creek, M Brown, R Breitling, ...
Metabolomics 9, 44-66, 2013
Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold‐regulated gene expression with modifications in metabolite …
F Kaplan, J Kopka, DY Sung, W Zhao, M Popp, R Porat, CL Guy
The Plant Journal 50 (6), 967-981, 2007
Priming and memory of stress responses in organisms lacking a nervous system
M Hilker, J Schwachtje, M Baier, S Balazadeh, I Bäurle, S Geiselhardt, ...
Biological Reviews 91 (4), 1118-1133, 2016
Downregulation of cinnamoyl-coenzyme A reductase in poplar: multiple-level phenotyping reveals effects on cell wall polymer metabolism and structure
JC Leple, R Dauwe, K Morreel, V Storme, C Lapierre, B Pollet, ...
The Plant Cell 19 (11), 3669-3691, 2007
Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants
VJ Nikiforova, J Kopka, V Tolstikov, O Fiehn, L Hopkins, MJ Hawkesford, ...
Plant physiology 138 (1), 304-318, 2005
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology
E Urbanczyk‐Wochniak, A Luedemann, J Kopka, J Selbig, ...
EMBO reports 4 (10), 989-993, 2003
Phosphorus stress in common bean: root transcript and metabolic responses
G Hernández, M Ramírez, O Valdés-López, M Tesfaye, MA Graham, ...
Plant physiology 144 (2), 752-767, 2007
Plant metabolomics reveals conserved and divergent metabolic responses to salinity
DH Sanchez, MR Siahpoosh, U Roessner, M Udvardi, J Kopka
Physiologia plantarum 132 (2), 209-219, 2008
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