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James J Cai
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Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia
PCY Woo, SKP Lau, C Chu, K Chan, H Tsoi, Y Huang, BHL Wong, ...
Journal of virology 79 (2), 884-895, 2005
18982005
Widespread establishment and regulatory impact of Alu exons in human genes
S Shen, L Lin, JJ Cai, P Jiang, EJ Kenkel, MR Stroik, S Sato, BL Davidson, ...
Proceedings of the National Academy of Sciences 108 (7), 2837-2842, 2011
1492011
Pervasive hitchhiking at coding and regulatory sites in humans
JJ Cai, JM Macpherson, G Sella, DA Petrov
PLoS genetics 5 (1), e1000336, 2009
1492009
Genetic variants contribute to gene expression variability in humans
AM Hulse, JJ Cai
Genetics 193 (1), 95-108, 2013
1292013
Diverse splicing patterns of exonized Alu elements in human tissues
L Lin, S Shen, A Tye, JJ Cai, P Jiang, BL Davidson, Y Xing
PloS Genetics 4 (10), e1000225, 2008
1292008
High diversity of polyketide synthase genes and the melanin biosynthesis gene cluster in Penicillium marneffei
PCY Woo, EWT Tam, KTK Chong, JJ Cai, ETK Tung, AHY Ngan, SKP Lau, ...
FEBS Journal 277 (18), 3750-3758, 2010
1212010
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
JJ Cai, DA Petrov
Genome biology and evolution 2, 393-409, 2010
1202010
Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control
D Osorio, JJ Cai
Bioinformatics 37 (7), 963-967, 2021
1172021
Aberrant gene expression in humans.
Y Zeng, GW Wang, E Yang, G Ji, BL Candice L., JJ Cai
PLoS genetics 11 (1), e1004942, 2015
852015
Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota
JJ Cai, PCY Woo, SKP Lau, DK Smith, K Yuen
Journal of molecular evolution 63 (1), 1-11, 2006
842006
Broker genes in human disease
JJ Cai, E Borenstein, DA Petrov
Genome Biology and Evolution 2, 815, 2010
802010
Commonality in dysregulated expression of gene sets in cortical brains of individuals with autism, schizophrenia, and bipolar disorder
J Guan, JJ Cai, G Ji, PC Sham
Translational psychiatry 9 (1), 152, 2019
732019
Genomic and experimental evidence for a potential sexual cycle in the pathogenic thermal dimorphic fungus< i> Penicillium marneffei</i>
PCY Woo, KTK Chong, H Tse, JJ Cai, CCY Lau, AC Zhou, SKP Lau, ...
FEBS letters 580 (14), 3409-3416, 2006
722006
The mitochondrial genome of the thermal dimorphic fungus< i> Penicillium marneffei</i> is more closely related to those of molds than yeasts
PCY Woo, H Zhen, JJ Cai, J Yu, SKP Lau, J Wang, JLL Teng, SSY Wong, ...
FEBS letters 555 (3), 469-477, 2003
712003
Long noncoding RNA MALAT1 regulates generation of reactive oxygen species and the insulin responses in male mice
J Chen, S Ke, L Zhong, J Wu, A Tseng, B Morpurgo, A Golovko, G Wang, ...
Biochemical Pharmacology 152, 94-103, 2018
682018
Novel partitivirus enhances virulence of and causes aberrant gene expression in Talaromyces marneffei
SKP Lau, GCS Lo, FWN Chow, RYY Fan, JJ Cai, KY Yuen, PCY Woo
MBio 9 (3), 10.1128/mbio. 00947-18, 2018
642018
Similarly strong purifying selection acts on human disease genes of all evolutionary ages
JJ Cai, E Borenstein, R Chen, DA Petrov
Genome biology and evolution 1, 131, 2009
642009
The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats
PCY Woo, SKP Lau, H Tse, JLL Teng, SOT Curreem, AKL Tsang, ...
PLoS genetics 5 (3), e1000416, 2009
632009
MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution
JJ Cai, DK Smith, X Xia, K Yuen
BMC bioinformatics 6 (1), 64, 2005
632005
The lncRNA RZE1 Controls Cryptococcal Morphological Transition
N Chacko, Y Zhao, E Yang, L Wang, JJ Cai, X Lin
PLoS genetics 11 (11), e1005692, 2015
602015
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